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(-) Description

Title :  TANKYRASE 2 IN COMPLEX WITH FLAVONE
 
Authors :  M. Narwal, T. Haikarainen, L. Lehtio
Date :  15 Oct 12  (Deposition) - 31 Oct 12  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,C,D,H
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  D,H  (1x)
Keywords :  Protein-Ligand Complex, Diphtheria Toxin Like Fold, Transferase, Adp- Ribosylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Narwal, T. Haikarainen, A. Fallarero, P. M. Vuorela, L. Lehtio
Screening And Structural Analysis Of Flavones Inhibiting Tankyrases.
J. Med. Chem. V. 56 3507 2013
PubMed-ID: 23574272  |  Reference-DOI: 10.1021/JM3018783

(-) Compounds

Molecule 1 - TANKYRASE-2
    Chains: A, H
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC-BSA4
    Expression System Strain: ROSETTA 2(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL FRAGMENT, UNP RESIDUES 946-1113
    Gene: TNKS2, PARP5B, TANK2, TNKL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TANK2, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6, ARTD6, POLY [ADP-RIBOSE] POLYMERASE 5B, TNKS-2, TRF1-INTERACTING ANKYRIN-RELATED ADP-RIBOSE POLYMERASE 2, TANKYRASE II, TANKYRASE-LIKE PROTEIN, TANKYRASE-RELATED PROTEIN
 
Molecule 2 - TANKYRASE-2
    Chains: C, D
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLASMID
    Expression System Strain: ROSETTA 2(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL FRAGMENT, UNP RESIDUES 1114-1162
    Gene: TNKS2, PARP5B, TANK2, TNKL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ACDH
Biological Unit 1 (1x): AC  
Biological Unit 2 (1x):   DH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric Unit (5, 12)
No.NameCountTypeFull Name
1FLN2Ligand/Ion2-PHENYL-4H-CHROMEN-4-ONE
2GOL2Ligand/IonGLYCEROL
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
4SO44Ligand/IonSULFATE ION
5ZN2Ligand/IonZINC ION
Biological Unit 1 (4, 5)
No.NameCountTypeFull Name
1FLN1Ligand/Ion2-PHENYL-4H-CHROMEN-4-ONE
2GOL1Ligand/IonGLYCEROL
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO42Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (4, 5)
No.NameCountTypeFull Name
1FLN1Ligand/Ion2-PHENYL-4H-CHROMEN-4-ONE
2GOL1Ligand/IonGLYCEROL
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO42Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:1081 , HIS A:1084 , CYS A:1089 , CYS A:1092BINDING SITE FOR RESIDUE ZN A 1201
02AC2SOFTWAREARG A:977 , HIS A:979 , ARG A:980 , LYS A:1067BINDING SITE FOR RESIDUE SO4 A 1202
03AC3SOFTWAREASN A:990 , ARG A:991 , PRO C:1160 , GLU C:1161 , HOH C:1303BINDING SITE FOR RESIDUE SO4 A 1203
04AC4SOFTWAREHIS A:1031 , GLY A:1032 , TYR A:1050 , TYR A:1060 , LYS A:1067 , SER A:1068 , TYR A:1071 , GLU C:1138BINDING SITE FOR RESIDUE FLN A 1204
05AC5SOFTWAREPRO C:1129 , SER C:1130 , VAL C:1131 , GLY C:1133 , HOH C:1315BINDING SITE FOR RESIDUE GOL C 1201
06AC6SOFTWARETRP A:1006 , TYR C:1148 , GLU C:1150BINDING SITE FOR RESIDUE PEG C 1202
07AC7SOFTWARECYS H:1081 , HIS H:1084 , CYS H:1089 , CYS H:1092BINDING SITE FOR RESIDUE ZN H 1201
08AC8SOFTWAREARG H:977 , HIS H:979 , ARG H:980 , LYS H:1067 , GLN H:1070BINDING SITE FOR RESIDUE SO4 H 1202
09AC9SOFTWAREPRO D:1160 , GLU D:1161 , HOH D:1201 , ASN H:990 , ARG H:991BINDING SITE FOR RESIDUE SO4 H 1203
10BC1SOFTWAREGLU D:1138 , HIS H:1031 , GLY H:1032 , TYR H:1050 , TYR H:1060 , LYS H:1067 , SER H:1068 , TYR H:1071BINDING SITE FOR RESIDUE FLN H 1204
11BC2SOFTWAREGLU H:978 , HIS H:979 , GLY H:982 , GLY H:983 , ILE H:988 , PHE H:989 , HOH H:1317 , HOH H:1367BINDING SITE FOR RESIDUE GOL H 1205
12BC3SOFTWARETYR D:1148 , GLU D:1150 , LYS H:999 , CYS H:1001 , ASN H:1002 , TRP H:1006 , ASN H:1022BINDING SITE FOR RESIDUE PEG H 1206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HKI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HKI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HKI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HKI)

(-) Exons   (0, 0)

(no "Exon" information available for 4HKI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh................eeeeeeeeeehhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh.hhhhh.........eeee.hhhhhhh...hhhhh...............eeeeeeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hki A  952 GTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSA 1112
                                   961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111 


Chain C from PDB  Type:PROTEIN  Length:47
                                                                                
               SCOP domains ----------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeee........eeee.hhh.eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                4hki C 1115 MAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQAYPEYLITYQIMRPE 1161
                                  1124      1134      1144      1154       


Chain D from PDB  Type:PROTEIN  Length:47
                                                                                
               SCOP domains ----------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeee........eeee.hhh.eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                4hki D 1115 MAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQAYPEYLITYQIMRPE 1161
                                  1124      1134      1144      1154       


Chain H from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh................eeeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhh.hhhhh.........eeee.hhhhhhh...hhhhh...............eeeeeeeee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4hki H  952 GTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAM 1113
                                   961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HKI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HKI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HKI)

(-) Gene Ontology  (29, 29)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNKS2_HUMAN | Q9H2K2: 2y0i 3kr7 3kr8 3mhj 3mhk 3p0n 3p0p 3p0q 3twq 3twr 3tws 3twt 3twu 3twv 3tww 3twx 3u9h 3u9y 3ua9 3w51 4avu 4avw 4bfp 4bj9 4bjb 4bjc 4bs4 4bu3 4bu5 4bu6 4bu7 4bu8 4bu9 4bua 4bud 4bue 4buf 4bui 4bus 4but 4buu 4buv 4buw 4bux 4buy 4hkk 4hkn 4hl5 4hlf 4hlg 4hlh 4hlk 4hlm 4hmh 4hyf 4iue 4j1z 4j21 4j22 4j3l 4j3m 4kzl 4kzq 4kzu 4l09 4l0b 4l0i 4l0s 4l0t 4l0v 4l10 4l2f 4l2g 4l2k 4l31 4l32 4l33 4l34 4m7b 4pml 4pnl 4pnm 4pnn 4pnq 4pnr 4pns 4pnt 4tju 4tjw 4tjy 4tk0 4tk5 4tkf 4tkg 4tki 4ufu 4ufy 4uhg 4ui3 4ui4 4ui5 4ui6 4ui7 4ui8 4uvl 4uvn 4uvo 4uvp 4uvs 4uvt 4uvu 4uvv 4uvw 4uvx 4uvy 4uvz 4ux4 4w5i 4z68 5adq 5adr 5ads 5adt 5aeh 5aku 5akw 5al1 5al2 5al3 5al4 5al5 5bxo 5bxu 5c5p 5c5q 5c5r 5dcz 5fpf 5fpg 5jrt

(-) Related Entries Specified in the PDB File

3u9h TANKYRASE 2 IN COMPLE WITH NICOTINAMIDE
3u9y TANKYRASE 2 IN COMPLE WITH OLAPARIB
3ua9 TANKYRASE 2 IN COMPLE WITH A SELECTIVE INHIBITOR
4hkk TANKYRASE 2 IN COMPLE WITH APIGENIN
4hkn TANKYRASE 2 IN COMPLE WITH LUTEOLIN
4hl5 TANKYRASE 2 IN COMPLE WITH 7-HYDROXY -4'-METHOXYFLAVONE
4hlf TANKYRASE 2 IN COMPLE WITH 7,3',4'-TRIHYDROXYFLAVONE
4hlg TANKYRASE 2 IN COMPLE WITH 3'-HYDROXYFLAVONE
4hlh TANKYRASE 2 IN COMPLE WITH 4'-FLUOROFLAVONE
4hlk TANKYRASE 2 IN COMPLEX WITH 4'-METHYLFLAVONE
4hlm TANKYRASE 2 IN COMPLEX WITH 3',4'-DIHYDROXYFLAVONE
4hmh TANKYRASE 2 IN COMPLEX WITH 7,3-DIHYDROXYFLAVONE