4OT2 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF EQUINE SERUM ALBUMIN IN COMPLEX WITH NAPROXEN

Authors :   B. Sekula, A. Bujacz, K. Zielinski, G. Bujacz

Date :   13 Feb 14 (Deposition) - 04 Jun 14 (Release) - 10 Sep 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.42

Chains :   Asym./Biol. Unit : A

Keywords :   Helical, Three-Domain Protein, Serum Albumin Superfamily, Transport Protein, Fatty Acids, Metabolites And Drugs, Naproxen, Plasma (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Bujacz, K. Zielinski, B. Sekula
Structural Studies Of Bovine, Equine, And Leporine Serum Albumin Complexes With Naproxen.
Proteins V. 82 2199 2014
PubMed-ID: 24753230 | Reference-DOI: 10.1002/PROT.24583

Molecule 1 - SERUM ALBUMIN
	Chains	:	A
	Fragment	:	UNP RESIDUES 25-607
	Organism Common	:	DOMESTIC HORSE, EQUINE
	Organism Scientific	:	EQUUS CABALLUS
	Organism Taxid	:	9796

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 9)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	MLI	4	Ligand/Ion	MALONATE ION
3	NPS	2	Ligand/Ion	(2S)-2-(6-METHOXYNAPHTHALEN-2-YL)PROPANOIC ACID
4	SIN	1	Ligand/Ion	SUCCINIC ACID

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:390 , CYS A:391 , PHE A:402 , ARG A:409 , TYR A:410 , LYS A:413 , LEU A:429 , SER A:448 , LEU A:452 , SER A:488	BINDING SITE FOR RESIDUE NPS A 601
2	AC2	SOFTWARE	ARG A:208 , ALA A:212 , LYS A:350 , SER A:479 , LEU A:480	BINDING SITE FOR RESIDUE NPS A 602
3	AC3	SOFTWARE	TYR A:149 , LEU A:237 , ARG A:256 , ALA A:290 , ACT A:605 , HOH A:706 , HOH A:750	BINDING SITE FOR RESIDUE SIN A 603
4	AC4	SOFTWARE	ARG A:409 , GLU A:491 , LEU A:492	BINDING SITE FOR RESIDUE ACT A 604
5	AC5	SOFTWARE	LYS A:194 , LYS A:221 , ALA A:290 , SIN A:603 , MLI A:609 , HOH A:787 , HOH A:802	BINDING SITE FOR RESIDUE ACT A 605
6	AC6	SOFTWARE	LEU A:66 , PHE A:70 , GLY A:247 , ASP A:248 , LEU A:249 , LEU A:250 , GLU A:251	BINDING SITE FOR RESIDUE MLI A 606
7	AC7	SOFTWARE	ASP A:131 , GLY A:135	BINDING SITE FOR RESIDUE MLI A 607
8	AC8	SOFTWARE	PHE A:501 , HIS A:534 , LYS A:535 , GLN A:579	BINDING SITE FOR RESIDUE MLI A 608
9	AC9	SOFTWARE	LYS A:194 , TRP A:213 , ARG A:217 , HIS A:451 , ACT A:605 , HOH A:751 , HOH A:753 , HOH A:800 , HOH A:802	BINDING SITE FOR RESIDUE MLI A 609

Asymmetric/Biological Unit

No.	Residues
1	A:53	-	A:62
2	A:75	-	A:91
3	A:90	-	A:101
4	A:123	-	A:168
5	A:167	-	A:176
6	A:199	-	A:245
7	A:244	-	A:252
8	A:264	-	A:278
9	A:277	-	A:288
10	A:315	-	A:360
11	A:359	-	A:368
12	A:391	-	A:437
13	A:436	-	A:447
14	A:460	-	A:476
15	A:475	-	A:486
16	A:513	-	A:558
17	A:557	-	A:566

Asymmetric/Biological Unit

No.	Residues
1	Glu A:95	-	Pro A:96

(no "SAP(SNP)/Variant" information available for 4OT2)

(no "PROSITE Motif" information available for 4OT2)

(no "Exon" information available for 4OT2)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:580
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...hhhhhh....hhhhh..hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh......hhhhhhh.hhhhhhhhhhh............hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhh...........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ot2 A   4 KSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPADDKLACLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYRTVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGREDKEACFAEEGPKLVASSQLALA 583
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4OT2)

(no "CATH Domain" information available for 4OT2)

(no "Pfam Domain" information available for 4OT2)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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		AC9	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:95 - Pro A:96	[ RasMol ]

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4f5t	NATIVE EQUINE SERUM ALBUMIN
4f5u	NATIVE EQUINE SERUM ALBUMIN
4j2v	EQUINE SERUM ALBUMIN WITH 3,5-DIIODOSALICYLIC ACID

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 9)

Sites (9, 9)

SS Bonds (17, 17)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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Gene Ontology (16, 16)

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