4ODR - JenaLib

Title :   STRUCTURE OF SLYD DELTA-IF FROM THERMUS THERMOPHILUS IN COMPLEX WITH FK506

Authors :   E. M. Quistgaard, C. Low, P. Nordlund

Date :   10 Jan 14 (Deposition) - 14 Jan 15 (Release) - 14 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.93

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Fkbp Domain, Chaperone, Peptidyl-Prolyl Isomerase, Ppiase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. M. Quistgaard, C. Low, P. Nordlund
Structure Of Slyd Delta-If From Thermus Thermophilus In Complex With Fk506
To Be Published
PubMed: search

Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP1A CHIMERA
	Chains	:	A, B
	EC Number	:	5.2.1.8
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	SEE REMARK 999
	Gene	:	TTHA0346, FKBP1, FKBP12, FKBP1A
	Organism Common	:	BACTERIA, HUMAN
	Organism Scientific	:	THERMUS THERMOPHILUS, HOMO SAPIENS
	Organism Taxid	:	274, 9606
	Synonym	:	TTSLYD, PPIASE FKBP1A, 12 KDA FK506-BINDING PROTEIN, 12 KDA FKBP, FKBP-12, CALSTABIN-1, FK506-BINDING PROTEIN 1A, FKBP-1A, IMMUNOPHILIN FKBP12, ROTAMASE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 16)

Asymmetric Unit (5, 16)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	CL	2	Ligand/Ion	CHLORIDE ION
3	FK5	2	Ligand/Ion	8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN
4	GOL	6	Ligand/Ion	GLYCEROL
5	ZN	3	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 7)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FK5	1	Ligand/Ion	8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN
4	GOL	4	Ligand/Ion	GLYCEROL
5	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FK5	1	Ligand/Ion	8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN
4	GOL	2	Ligand/Ion	GLYCEROL
5	ZN	-1	Ligand/Ion	ZINC ION

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:13 , LEU A:15 , ASP A:23 , LEU A:27 , ASN A:35 , LEU A:36 , ILE A:37 , LEU A:40 , ALA A:62 , TYR A:63 , GOL A:206 , HOH A:320 , HOH A:336 , HOH A:348 , HOH A:358 , HOH A:442 , FK5 B:201	BINDING SITE FOR RESIDUE FK5 A 201
02	AC2	SOFTWARE	HIS A:97 , HIS A:99 , HIS A:101 , HIS B:68	BINDING SITE FOR RESIDUE ZN A 202
03	AC3	SOFTWARE	GLN A:5 , ASP A:6 , HIS A:33 , ACT A:209 , ACT A:210	BINDING SITE FOR RESIDUE ZN A 203
04	AC4	SOFTWARE	TYR A:29 , ASN A:35 , HIS A:99 , ALA A:100 , HOH A:349	BINDING SITE FOR RESIDUE CL A 204
05	AC5	SOFTWARE	PRO A:69 , GLY A:70 , PRO A:73 , HOH A:374 , HOH A:425 , HOH A:432	BINDING SITE FOR RESIDUE GOL A 205
06	AC6	SOFTWARE	TYR A:13 , GLY A:25 , GLU A:26 , FK5 A:201 , HOH A:331 , HOH A:378	BINDING SITE FOR RESIDUE GOL A 206
07	AC7	SOFTWARE	SER A:28 , LYS A:86 , ARG A:88 , HIS A:101 , PRO A:102 , SER A:103 , HOH A:302 , HOH A:342	BINDING SITE FOR RESIDUE GOL A 207
08	AC8	SOFTWARE	ALA A:43 , ARG A:47 , GLN A:54 , ALA A:55 , HIS A:56 , HOH A:303 , HOH A:430 , GLY B:50 , GLU B:51 , HOH B:332	BINDING SITE FOR RESIDUE GOL A 208
09	AC9	SOFTWARE	ASP A:6 , LEU A:95 , ZN A:203 , ACT A:210	BINDING SITE FOR RESIDUE ACT A 209
10	BC1	SOFTWARE	GLN A:5 , ASP A:6 , ZN A:203 , ACT A:209	BINDING SITE FOR RESIDUE ACT A 210
11	BC2	SOFTWARE	FK5 A:201 , TYR B:13 , LEU B:15 , ASP B:23 , LEU B:27 , ASN B:35 , LEU B:36 , ILE B:37 , LEU B:40 , ALA B:62 , TYR B:63 , HOH B:343 , HOH B:358 , HOH B:380 , HOH B:402 , HOH B:434	BINDING SITE FOR RESIDUE FK5 B 201
12	BC3	SOFTWARE	HIS A:68 , HIS B:97 , HIS B:99 , HIS B:101	BINDING SITE FOR RESIDUE ZN B 202
13	BC4	SOFTWARE	TYR B:29 , ASN B:35 , HIS B:99 , ALA B:100 , HOH B:437	BINDING SITE FOR RESIDUE CL B 203
14	BC5	SOFTWARE	THR B:10 , SER B:28 , LYS B:86 , ARG B:88 , HIS B:101 , PRO B:102 , SER B:103 , HOH B:306 , HOH B:355 , HOH B:383	BINDING SITE FOR RESIDUE GOL B 204
15	BC6	SOFTWARE	GLU B:20 , HIS B:33 , LEU B:95 , LEU B:96 , HIS B:97 , GLY B:98 , HOH B:371 , HOH B:413 , HOH B:431 , HOH B:454	BINDING SITE FOR RESIDUE GOL B 205
16	BC7	SOFTWARE	ARG B:12 , TYR B:13 , THR B:14 , GLN B:81 , HOH B:408	BINDING SITE FOR RESIDUE ACT B 206

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:104
                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee..eeeeeeeeeee......hhhhhhhhh......eeeeeehhhhh...............eeeeeeeeeeee.hhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 4odr A   1 MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGATGHPGIIPPHATLDFQVEVVKVREATPEELLHGHAHPSG 104
                                    10        20        30        40        50        60        70        80        90       100

Chain B from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee..eeeeeeeeeee......hhhhhhhhh......eeeeeehhhhh...............eeeeeeeeeeee.hhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 4odr B   1 MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGATGHPGIIPPHATLDFQVEVVKVREATPEELLHGHAHPSGH 105
                                    10        20        30        40        50        60        70        80        90       100

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (45, 49)

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