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(-) Description

Title :  CRYSTAL STRUCTURE OF THERMOPHILIC SLYD
 
Authors :  P. Neumann, C. Loew, M. T. Stubbs, J. Balbach
Date :  06 Mar 08  (Deposition) - 10 Mar 09  (Release) - 28 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Slyd, Prolyl Cis Trans Isomerase, Chaperone, Rotamase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Loew, P. Neumann, H. Tidow, U. Weininger, C. Haupt, B. Friedrich-Epler, C. Scholz, M. T. Stubbs, J. Balbach
Crystal Structure Determination And Functional Characterization Of The Metallochaperone Slyd From Thermus Thermophilus
J. Mol. Biol. V. 398 375 2010
PubMed-ID: 20230833  |  Reference-DOI: 10.1016/J.JMB.2010.03.014

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
    Chains: A
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PET-VECTOR
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: SLYD

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:47 , PHE A:53BINDING SITE FOR RESIDUE SO4 A 159

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CGN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3CGN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CGN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CGN)

(-) Exons   (0, 0)

(no "Exon" information available for 3CGN)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:151
 aligned with Q5SLE7_THET8 | Q5SLE7 from UniProtKB/TrEMBL  Length:149

    Alignment length:151
                                                                                                                                                                              149  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        |- 
         Q5SLE7_THET8     1 MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAH--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee..eeeeeeeeeee......hhhhhhhhh......eeeeeehhhhh....hhh.eeeehhhhh..........ee...........eeeeeee..eeeee.........eeeeeeeeeeee.hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cgn A   1 MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAHPS 151
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CGN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3CGN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CGN)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q5SLE7_THET8 | Q5SLE7)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.

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        Q5SLE7_THET8 | Q5SLE7: 3cgm 3luo 4odk 4odl 4odm 4odn 4odo 4odp 4odq 4odr

(-) Related Entries Specified in the PDB File

3cgm THE POLYMORPHIC STRUCTURE OF THERMUS THERMOPHILUS SLYD