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(-) Description

Title :  CRYSTAL STRUCTURE OF TTK KINASE DOMAIN WITH AN INHIBITOR: 401498 (N-[(1R)-1-(2-CHLOROPHENYL)PROPYL]-3-{4-[(1-METHYLPIPERIDIN-4-YL) OXY]PHENYL}-1H-INDAZOLE-5-CARBOXAMIDE)
 
Authors :  W. Qiu, O. Plotnikova, M. Feher, D. E. Awrey, N. Y. Chirgadze
Date :  22 Dec 13  (Deposition) - 24 Dec 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.38
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase, Ttk, Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Qiu, O. Plotnikova, M. Feher, D. E. Awrey, N. Y. Chirgadze
Crystal Structure Of Ttk Kinase Domain With An Inhibitor: 401498
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DUAL SPECIFICITY PROTEIN KINASE TTK
    Chains: A, B
    EC Number: 2.7.12.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN
    Gene: TTK, MPS1, MPS1L1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE, PYT

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric Unit (4, 7)
No.NameCountTypeFull Name
12QK2Ligand/IonN-[(1R)-1-(2-CHLOROPHENYL)PROPYL]-3-{4-[(1-METHYLPIPERIDIN-4-YL)OXY]PHENYL}-1H-INDAZOLE-5-CARBOXAMIDE
2GOL2Ligand/IonGLYCEROL
3SEP1Mod. Amino AcidPHOSPHOSERINE
4TPO2Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 1 (4, 5)
No.NameCountTypeFull Name
12QK1Ligand/IonN-[(1R)-1-(2-CHLOROPHENYL)PROPYL]-3-{4-[(1-METHYLPIPERIDIN-4-YL)OXY]PHENYL}-1H-INDAZOLE-5-CARBOXAMIDE
2GOL1Ligand/IonGLYCEROL
3SEP1Mod. Amino AcidPHOSPHOSERINE
4TPO2Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
12QK1Ligand/IonN-[(1R)-1-(2-CHLOROPHENYL)PROPYL]-3-{4-[(1-METHYLPIPERIDIN-4-YL)OXY]PHENYL}-1H-INDAZOLE-5-CARBOXAMIDE
2GOL1Ligand/IonGLYCEROL
3SEP-1Mod. Amino AcidPHOSPHOSERINE
4TPO-1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:531 , ALA A:551 , LYS A:553 , ILE A:586 , GLU A:603 , GLY A:605 , ILE A:607 , ASP A:608 , LEU A:654 , ASP A:664 , GLN A:670 , MET A:671 , PRO A:673 , TPO A:675BINDING SITE FOR RESIDUE 2QK A 1001
2AC2SOFTWAREHIS A:639 , PRO A:713 , LYS A:714 , VAL A:717 , SER A:781 , ILE A:782 , PRO A:783 , HOH A:1117BINDING SITE FOR RESIDUE GOL A 1002
3AC3SOFTWARETPO A:676 , ILE B:531 , GLY B:532 , SER B:533 , GLY B:534 , SER B:537 , ALA B:551 , LYS B:553 , ILE B:586 , MET B:602 , GLU B:603 , CYS B:604 , GLY B:605 , ASN B:606 , ILE B:607 , ASP B:608 , LEU B:654 , ASP B:664 , HOH B:1126BINDING SITE FOR RESIDUE 2QK B 1001
4AC4SOFTWAREHIS B:639 , PRO B:713 , LYS B:714 , VAL B:717 , SER B:781 , ILE B:782 , PRO B:783 , HOH B:1116BINDING SITE FOR RESIDUE GOL B 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O6L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O6L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O6L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O6L)

(-) Exons   (0, 0)

(no "Exon" information available for 4O6L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeeeeeeeeee..eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhh.........eeeeee...eeeeeee...eehhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee..eeee.........ee.........hhhhhhh....hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...........hhhhhhhhhhhh........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6l A 515 NECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDttsTVNYMPPEAIKDMSISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQI 793
                                   524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674||||   692      |713       723       733       743       753       763       773       783       793
                                                                                                                                                                                          675-TPO         699|                                                                                  
                                                                                                                                                                                           676-TPO         711                                                                                  
                                                                                                                                                                                            677-SEP                                                                                             
                                                                                                                                                                                             686                                                                                                


Chain B from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeeeeeeeee...eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhhh........eeeeee...eeeeee....eehhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee..eeee.................hhhhhhh...hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...........hhhhhhhhhhhh........hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6l B 515 NECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPGTVNYMPPEAIKDMISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQI 793
                                   524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       685       695  ||   717       727       737       747       757       767       777       787      
                                                                                                                                                                                        673|          698|                                                                                  
                                                                                                                                                                                         685           711
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O6L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O6L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O6L)

(-) Gene Ontology  (21, 21)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TTK_HUMAN | P33981: 2x9e 2zmc 2zmd 3cek 3dbq 3gfw 3h9f 3hmn 3hmo 3hmp 3vqu 3w1f 3wyx 3wyy 3wzj 3wzk 4b94 4bhz 4bi0 4bi1 4bi2 4c4e 4c4f 4c4g 4c4h 4c4i 4c4j 4cv8 4cv9 4cva 4d2s 4h7x 4h7y 4js8 4jt3 4zeg 5ap0 5ap1 5ap2 5ap3 5ap4 5ap5 5ap6 5ap7 5eh0 5ehl 5eho 5ehy 5ei2 5ei6 5ei8 5ljj 5n7v 5n84 5n87 5n93 5n9s 5na0 5nad

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