4M53 - JenaLib

Title :   GAMMA SUBUNIT OF THE TRANSLATION INITIATION FACTOR 2 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH GDPCP

Authors :   O. S. Nikonov, E. A. Stolboushkina, V. I. Arkhipova, A. M. Lazopulo, S. M. Lazopulo, A. G. Gabdulkhakov, A. D. Nikulin, M. B. Garber, S. V. Ni

Date :   07 Aug 13 (Deposition) - 28 Aug 13 (Release) - 12 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   Aif2, Aif2 Gamma Subunit, G-Protein, Translation, Translation Initiation, Protein Biosynthesis, Rna-Binding, Gtp-Binding, Nucleotide-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   O. Nikonov, E. Stolboushkina, V. Arkhipova, O. Kravchenko, S. Nikonov, M. Garber
Conformational Transitions In The Gamma Subunit Of The Archaeal Translation Initiation Factor 2
Acta Crystallogr. , Sect. D V. 70 658 2014
PubMed: search | Reference-DOI: 10.1107/S1399004713032240

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 36)

Sites (36, 36)

Asymmetric Unit (36, 36)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:34 , SER A:35 , LYS A:36 , TYR A:51 , ARG A:219 , HOH A:837	BINDING SITE FOR RESIDUE BME A 501
02	AC2	SOFTWARE	ALA A:342 , LYS A:343 , ARG A:404 , HOH A:670 , HOH A:680 , HOH A:698 , HOH A:1119	BINDING SITE FOR RESIDUE FMT A 502
03	AC3	SOFTWARE	TYR A:206 , ARG A:207 , ASP A:208 , GLN A:211 , ILE A:243 , HOH A:676 , HOH A:753	BINDING SITE FOR RESIDUE FMT A 503
04	AC4	SOFTWARE	THR A:204 , PRO A:205 , ARG A:207 , HOH A:617 , HOH A:996	BINDING SITE FOR RESIDUE FMT A 504
05	AC5	SOFTWARE	LEU A:105 , ILE A:139 , SER A:360 , VAL A:361 , GLY A:362 , HOH A:721 , HOH A:723	BINDING SITE FOR RESIDUE FMT A 505
06	AC6	SOFTWARE	LYS A:64 , TYR A:68 , LEU A:86 , HOH A:692 , HOH A:949	BINDING SITE FOR RESIDUE FMT A 506
07	AC7	SOFTWARE	LYS A:347 , VAL A:348 , ASP A:349 , ARG A:399 , ILE A:401 , HOH A:1045 , HOH A:1185	BINDING SITE FOR RESIDUE FMT A 507
08	AC8	SOFTWARE	THR A:365 , HOH A:794 , HOH A:960	BINDING SITE FOR RESIDUE FMT A 508
09	AC9	SOFTWARE	GLN A:251 , GLU A:252 , GLU A:344 , MET A:345 , HOH A:686	BINDING SITE FOR RESIDUE FMT A 509
10	BC1	SOFTWARE	LEU A:312 , SER A:364 , THR A:365 , HOH A:607 , HOH A:651 , HOH A:1229	BINDING SITE FOR RESIDUE FMT A 510
11	BC2	SOFTWARE	ARG A:130 , HOH A:756 , HOH A:757 , HOH A:968 , HOH A:1172 , HOH A:1244	BINDING SITE FOR RESIDUE FMT A 511
12	BC3	SOFTWARE	ASP A:152 , VAL A:153 , HIS A:187 , PRO A:324 , LEU A:326 , GCP A:525 , HOH A:623 , HOH A:661 , HOH A:744 , HOH A:758	BINDING SITE FOR RESIDUE FMT A 512
13	BC4	SOFTWARE	THR A:366 , LEU A:367 , ARG A:383 , ARG A:384 , HOH A:1079	BINDING SITE FOR RESIDUE FMT A 513
14	BC5	SOFTWARE	TRP A:3 , ASN A:55 , PRO A:72 , FMT A:517	BINDING SITE FOR RESIDUE FMT A 514
15	BC6	SOFTWARE	PRO A:125 , GLU A:252 , FMT A:522 , HOH A:639	BINDING SITE FOR RESIDUE FMT A 515
16	BC7	SOFTWARE	ARG A:280 , GLY A:282 , ASP A:283 , GCP A:526	BINDING SITE FOR RESIDUE FMT A 516
17	BC8	SOFTWARE	ARG A:88 , FMT A:514 , HOH A:655 , HOH A:849 , HOH A:1014	BINDING SITE FOR RESIDUE FMT A 517
18	BC9	SOFTWARE	SER A:155 , LYS A:156 , GLU A:157 , TRP A:327 , LEU A:382 , HOH A:830 , HOH A:845 , HOH A:1200	BINDING SITE FOR RESIDUE FMT A 518
19	CC1	SOFTWARE	ILE A:32 , ALA A:52 , GLU A:53 , HOH A:923 , HOH A:1150	BINDING SITE FOR RESIDUE FMT A 519
20	CC2	SOFTWARE	LYS A:212 , GLN A:244 , TRP A:389 , SER A:390 , HOH A:973 , HOH A:1022 , HOH A:1067	BINDING SITE FOR RESIDUE FMT A 520
21	CC3	SOFTWARE	THR A:30 , GLY A:31 , HOH A:658 , HOH A:765 , HOH A:1103	BINDING SITE FOR RESIDUE FMT A 521
22	CC4	SOFTWARE	PRO A:127 , FMT A:515 , HOH A:613 , HOH A:667 , HOH A:1216	BINDING SITE FOR RESIDUE FMT A 522
23	CC5	SOFTWARE	ASN A:121 , HOH A:629 , HOH A:858 , HOH A:1125 , HOH A:1183	BINDING SITE FOR RESIDUE FMT A 523
24	CC6	SOFTWARE	MET A:101 , ALA A:102 , MET A:358 , SER A:398 , TRP A:405 , ARG A:406 , HOH A:725 , HOH A:988	BINDING SITE FOR RESIDUE FMT A 524
25	CC7	SOFTWARE	VAL A:18 , ASP A:19 , HIS A:20 , GLY A:21 , LYS A:22 , THR A:23 , THR A:24 , GLY A:96 , ASN A:149 , LYS A:150 , ASP A:152 , VAL A:153 , SER A:184 , ALA A:185 , LEU A:186 , FMT A:512 , MG A:527 , HOH A:602 , HOH A:618 , HOH A:625 , HOH A:629 , HOH A:645 , HOH A:673 , HOH A:744 , HOH A:816 , HOH A:866 , HOH A:889 , HOH A:1096 , HOH A:1108 , HOH A:1190 , HOH A:1202 , HOH A:1253	BINDING SITE FOR RESIDUE GCP A 525
26	CC8	SOFTWARE	LYS A:36 , PHE A:221 , VAL A:223 , LYS A:234 , SER A:278 , ILE A:279 , ARG A:280 , GLY A:282 , ALA A:296 , GLY A:298 , FMT A:516 , HOH A:911 , HOH A:917 , HOH A:994 , HOH A:1013 , HOH A:1056 , HOH A:1070 , HOH A:1201 , HOH A:1210 , HOH A:1211 , HOH A:1217	BINDING SITE FOR RESIDUE GCP A 526
27	CC9	SOFTWARE	THR A:23 , GCP A:525 , HOH A:602 , HOH A:673 , HOH A:1202	BINDING SITE FOR RESIDUE MG A 527
28	DC1	SOFTWARE	THR A:54 , THR A:70 , HOH A:655 , HOH A:658 , HOH A:685 , HOH A:1103	BINDING SITE FOR RESIDUE NA A 528
29	DC2	SOFTWARE	VAL A:323 , HOH A:623 , HOH A:661 , HOH A:682 , HOH A:905 , HOH A:1163	BINDING SITE FOR RESIDUE NA A 529
30	DC3	SOFTWARE	MET A:111 , NA A:536 , HOH A:611 , HOH A:648 , HOH A:693 , HOH A:735 , HOH A:818	BINDING SITE FOR RESIDUE NA A 530
31	DC4	SOFTWARE	NA A:534 , NA A:535 , HOH A:743 , HOH A:746 , HOH A:851 , HOH A:859 , HOH A:877 , HOH A:1193	BINDING SITE FOR RESIDUE NA A 531
32	DC5	SOFTWARE	GLU A:66 , TYR A:68 , ASP A:192 , HOH A:737 , HOH A:1192	BINDING SITE FOR RESIDUE NA A 532
33	DC6	SOFTWARE	VAL A:151 , VAL A:154 , TRP A:327 , ASN A:328 , HOH A:1199 , HOH A:1200	BINDING SITE FOR RESIDUE NA A 533
34	DC7	SOFTWARE	NA A:531 , HOH A:851 , HOH A:877 , HOH A:888 , HOH A:906 , HOH A:1002 , HOH A:1244	BINDING SITE FOR RESIDUE NA A 534
35	DC8	SOFTWARE	GLN A:168 , PHE A:169 , LYS A:171 , NA A:531 , HOH A:746 , HOH A:775 , HOH A:1193	BINDING SITE FOR RESIDUE NA A 535
36	DC9	SOFTWARE	NA A:530 , HOH A:648 , HOH A:693 , HOH A:708 , HOH A:735 , HOH A:838 , HOH A:860	BINDING SITE FOR RESIDUE NA A 536

SS Bonds (2, 2)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:403
                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4m53a1 A:2-206 Initiation factor eIF2 gamma subunit, N-terminal (G) domain                                                                                                                       d4m53a2 A:207-320 Initiation factor eIF2 gamma subunit, domain II                                                 d4m53a3 A:321-415 Initiation factor eIF2 gamma subunit                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.....hhhhhhhhhhh.......eeeeeeeee.........ee....hhhhh.....eeeeeeeeee...hhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhhhh........eee.......hhhhhhhhhhhhh...........eeeeeeee.......hhhhh...eeeeeeee..ee...eeeeeeeeeeee..eeeeeeeeeeeeeeee..eee.ee.....eeeee..hhhhhhhhh....eeee......eeeeeeeeeee....................eeeeee..eeeeeeeeee...eeeeeeeeeee......eeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m53 A   2 AWPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGWGLVEI 415
                                    11        21        31    ||  52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412   
                                                             36|                                                                                                                                                                                                                                                                                                                                                                               
                                                              48

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (3, 3)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

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