4JJZ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCUTRE OF N10-FORMYLTETRAHYDROFOLATE SYNTHETASE WITH ADP AND FORMYLPHOSPHATE

Authors :   L. R. Celeste, L. L Lovelace, L. Lebioda

Date :   08 Mar 13 (Deposition) - 20 Mar 13 (Release) - 20 Mar 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)

Keywords :   Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. R. Celeste, G. Chai, M. Bielak, W. Minor, L. L. Lovelace, L. Lebioda
Mechanism Of N10-Formyltetrahydrofolate Synthetase Derived From Complexes With Intermediates And Inhibitors.
Protein Sci. V. 21 219 2012
PubMed-ID: 22109967 | Reference-DOI: 10.1002/PRO.2005

Molecule 1 - FORMATE--TETRAHYDROFOLATE LIGASE
	Chains	:	A, B
	EC Number	:	6.3.4.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PALTER1
	Expression System Strain	:	Y1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FHS, MOORELLA, MOTH_0109
	Organism Scientific	:	MOORELLA THERMOACETICA
	Organism Taxid	:	264732
	Strain	:	ATCC 39073
	Synonym	:	FORMYLTETRAHYDROFOLATE SYNTHETASE, FHS, FTHFS

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 11)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
3	MG	2	Ligand/Ion	MAGNESIUM ION
4	SO4	2	Ligand/Ion	SULFATE ION
5	TOE	2	Ligand/Ion	2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
6	XPO	2	Ligand/Ion	FORMYL PHOSPHATE

Biological Unit 1 (5, 9)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	SO4	2	Ligand/Ion	SULFATE ION
5	TOE	2	Ligand/Ion	2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
6	XPO	2	Ligand/Ion	FORMYL PHOSPHATE

Biological Unit 2 (5, 18)

No.	Name	Count	Type	Full Name
1	1PE	2	Ligand/Ion	PENTAETHYLENE GLYCOL
2	ADP	4	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	SO4	4	Ligand/Ion	SULFATE ION
5	TOE	4	Ligand/Ion	2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
6	XPO	4	Ligand/Ion	FORMYL PHOSPHATE

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:175 , ARG A:178 , GLY A:537 , HOH A:745 , ALA B:188	BINDING SITE FOR RESIDUE SO4 A 601
02	AC2	SOFTWARE	ASP A:7 , ALA A:70 , GLY A:71 , GLU A:72 , GLY A:73 , LYS A:74 , THR A:75 , THR A:76 , GLY A:113 , GLY A:114 , GLU A:301 , ASN A:382 , ALA A:383 , PHE A:384 , PRO A:385 , TRP A:412 , XPO A:603 , MG A:605 , HOH A:784	BINDING SITE FOR RESIDUE ADP A 602
03	AC3	SOFTWARE	LYS A:74 , ARG A:97 , LYS A:108 , PHE A:275 , ALA A:276 , GLU A:301 , GLY A:303 , PHE A:304 , ADP A:602 , MG A:605 , HOH A:785	BINDING SITE FOR RESIDUE XPO A 603
04	AC4	SOFTWARE	ARG A:162 , ILE A:164 , GLU A:194	BINDING SITE FOR RESIDUE TOE A 604
05	AC5	SOFTWARE	THR A:75 , GLU A:301 , ADP A:602 , XPO A:603 , HOH A:784 , HOH A:785	BINDING SITE FOR RESIDUE MG A 605
06	AC6	SOFTWARE	ALA A:188 , ARG B:175 , ARG B:178 , GLY B:537	BINDING SITE FOR RESIDUE SO4 B 601
07	AC7	SOFTWARE	GLU B:9 , ALA B:70 , GLU B:72 , GLY B:73 , LYS B:74 , THR B:75 , THR B:76 , LYS B:108 , GLY B:113 , GLY B:114 , GLU B:301 , ASN B:382 , ALA B:383 , PHE B:384 , PRO B:385 , TRP B:412 , XPO B:603 , MG B:606 , HOH B:716 , HOH B:742 , HOH B:774	BINDING SITE FOR RESIDUE ADP B 602
08	AC8	SOFTWARE	PRO B:67 , GLY B:71 , LYS B:74 , ARG B:97 , LYS B:108 , PHE B:275 , ALA B:276 , GLU B:301 , GLY B:303 , PHE B:304 , ADP B:602 , MG B:606 , HOH B:716 , HOH B:749	BINDING SITE FOR RESIDUE XPO B 603
09	AC9	SOFTWARE	ARG B:162 , ILE B:164 , GLU B:194 , GLU B:515	BINDING SITE FOR RESIDUE TOE B 604
10	BC1	SOFTWARE	PRO B:161 , ARG B:162 , GLY B:186 , VAL B:191 , PRO B:192 , ARG B:193 , GLU B:194 , HOH B:757 , HOH B:775	BINDING SITE FOR RESIDUE 1PE B 605
11	BC2	SOFTWARE	THR B:75 , GLU B:301 , ADP B:602 , XPO B:603 , HOH B:749 , HOH B:774	BINDING SITE FOR RESIDUE MG B 606

(no "SS Bond" information available for 4JJZ)

Asymmetric Unit

No.	Residues
1	Val A:120	-	Pro A:121
2	Val B:120	-	Pro B:121
3	Ala B:402	-	Gly B:403

(no "SAP(SNP)/Variant" information available for 4JJZ)

(no "PROSITE Motif" information available for 4JJZ)

(no "Exon" information available for 4JJZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:554
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4jjza_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....hhhhhhhh...hhh.eee.....eee.hhhhhhh......eeeeeee........hhhhhhhhhhhhhhhh...eeeee....hhhhhh......ee..eeeehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eee...hhhhh.eee..........eee.eee...hhhhhhhhhh.hhhhhhhhhhhheeee.....eee.....hhhhhhhhh......eeeee....eeee.............hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh..hhhhh...hhhhhhh.hhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh....eeeehhhhhhhhhhhhhh.............................eeeeeeeeee....eeeeee............hhhhhhee....ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jjz A   5 PSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGAGFIVPITGAIMTMPGLPKRPAACNIDIDADGVITGL 558
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554

Chain B from PDB  Type:PROTEIN  Length:552
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4jjzb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhh...hhh.eee.....eee.hhhhhhh......eeeeeee........hhhhhhhhhhhhhhhh...eeeee....hhhhh.......ee..eeeehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eee...hhhhh.eee...hhhhh..eee.eee...hhhhhhhhhh.hhhhhhhhhhh.eeee.....eee.....hhhhhhhhh......eeeee....eeee.............hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh....eeeehhhhhhhhhhhhhh.............................eeeeeeeeee....eeeeee............hhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jjz B   7 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGAGFIVPITGAIMTMPGLPKRPAACNIDIDADGVITGL 558
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: Nitrogenase iron protein-like (152)

Protein domain: automated matches (19)

Moorella thermoacetica [TaxId: 1525] (7)

1a	d4jjza_	A:
1b	d4jjzb_	B:

(no "CATH Domain" information available for 4JJZ)

(no "Pfam Domain" information available for 4JJZ)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		1PE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ADP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		TOE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		XPO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala B:402 - Gly B:403	[ RasMol ]
		Val A:120 - Pro A:121	[ RasMol ]
		Val B:120 - Pro B:121	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	4jjz
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	FTHS_MOOTA \| Q2RM91
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	FTHS_MOOTH \| P21164
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	6.3.4.3
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	FTHS_MOOTA \| Q2RM91
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	FTHS_MOOTH \| P21164
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	FTHS_MOOTA \| Q2RM91	:	4ioj 4iok 4iol 4iom 4jim 4jjk 4jki
	FTHS_MOOTH \| P21164	:	1eg7 1fp7 1fpm 3qus 4jim 4jjk 4jki

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 14)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File