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Title :   CRYSTAL STRUCUTRE OF N10-FORMYLTETRAHYDROFOLATE SYNTHETASE WITH ATPGS

Authors :   L. R. Celeste, G. Chai, M. Bielak, L. L. Lovelace, L. Lebioda

Date :   24 Feb 11 (Deposition) - 14 Dec 11 (Release) - 15 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.84

Chains :   Asym./Biol. Unit : A,B

Keywords :   Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. R. Celeste, G. Chai, M. Bielak, W. Minor, L. L. Lovelace, L. Lebioda
Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase With Atpgs
To Be Published
PubMed: search

Molecule 1 - FORMATE--TETRAHYDROFOLATE LIGASE
	Chains	:	A, B
	EC Number	:	6.3.4.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PALTER-1
	Expression System Strain	:	Y1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FHS, MOORELLA
	Organism Common	:	CLOSTRIDIUM THERMOACETICUM
	Organism Scientific	:	MOORELLA THERMOACETICA
	Organism Taxid	:	1525
	Synonym	:	FORMYLTETRAHYDROFOLATE SYNTHETASE, FHS, FTHFS

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 12)

No.	Name	Count	Type	Full Name
1	AGS	2	Ligand/Ion	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2	MAE	2	Ligand/Ion	MALEIC ACID
3	SO4	6	Ligand/Ion	SULFATE ION
4	TOE	2	Ligand/Ion	2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:74 , ARG A:97 , GLY A:303 , PHE A:304 , AGS A:700 , HOH A:814	BINDING SITE FOR RESIDUE SO4 A 601
02	AC2	SOFTWARE	SER A:44 , ASP A:46 , LYS A:256 , HOH A:736	BINDING SITE FOR RESIDUE SO4 A 603
03	AC3	SOFTWARE	ARG A:175 , ARG A:178 , GLY A:537	BINDING SITE FOR RESIDUE SO4 A 604
04	AC4	SOFTWARE	SER A:446 , ARG A:505 , ARG A:507 , HOH A:626	BINDING SITE FOR RESIDUE SO4 A 605
05	AC5	SOFTWARE	GLU A:72 , GLY A:73 , LYS A:74 , THR A:75 , THR A:76 , GLY A:113 , ASN A:382 , ALA A:383 , PHE A:384 , PRO A:385 , TRP A:412 , SO4 A:601 , HOH A:791	BINDING SITE FOR RESIDUE AGS A 700
06	AC6	SOFTWARE	ARG A:162 , ILE A:164 , GLU A:194 , HOH A:789	BINDING SITE FOR RESIDUE TOE A 701
07	AC7	SOFTWARE	TYR A:482	BINDING SITE FOR RESIDUE TOE A 702
08	AC8	SOFTWARE	ARG B:175 , ARG B:178 , MET B:533 , GLY B:537	BINDING SITE FOR RESIDUE SO4 B 602
09	AC9	SOFTWARE	LYS B:74 , ARG B:97 , GLY B:303 , PHE B:304	BINDING SITE FOR RESIDUE SO4 B 601
10	BC1	SOFTWARE	GLU B:9 , GLY B:71 , GLU B:72 , GLY B:73 , LYS B:74 , THR B:75 , THR B:76 , GLY B:113 , ALA B:383 , PHE B:384 , TRP B:412	BINDING SITE FOR RESIDUE AGS B 700
11	BC2	SOFTWARE	SER B:44 , LYS B:252 , LYS B:256	BINDING SITE FOR RESIDUE MAE B 702
12	BC3	SOFTWARE	ARG B:162 , ILE B:164 , GLU B:194 , HOH B:606 , HOH B:622	BINDING SITE FOR RESIDUE MAE B 703

(no "SS Bond" information available for 3QUS)

Asymmetric/Biological Unit

No.	Residues
1	Val A:120	-	Pro A:121
2	Val B:120	-	Pro B:121

(no "SAP(SNP)/Variant" information available for 3QUS)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FTHFS_1	PS00721	Formate--tetrahydrofolate ligase signature 1.	FTHS_MOOTH	106-116	2	A:106-116 B:106-116
2	FTHFS_2	PS00722	Formate--tetrahydrofolate ligase signature 2.	FTHS_MOOTH	331-342	2	A:331-342 B:331-342

(no "Exon" information available for 3QUS)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:550
 aligned with FTHS_MOOTH | P21164 from UniProtKB/Swiss-Prot  Length:559

    Alignment length:552
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555  
           FTHS_MOOTH     6 SDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDIDADGVITG 557
               SCOP domains d3qusa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhh..hhh.eee.....eee.hhhhhhhh.....eeeeeee........hhhhhhhhhhhhhhhh...eeeee....hhhhh.............eehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.....eehhhh...eee...hhhhh.eee...hhhhh..eee.eee...hhhhhhhhhh.hhhhhhhhhhh.eeeee....eee.hhhhhhhhhhhhh......eeeee....eeee.............hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhh......eehh--hhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh.....eeehhhhhhhhhhhhhh......eeee....................eee...eee...eeeee..............hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------FTHFS_1    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTHFS_2     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3qus A   6 SDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALS--WAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDIDADGVITG 557
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405   |  |415       425       435       445       455       465       475       485       495       505       515       525       535       545       555  
                                                                                                                                                                                                                                                                                                                                                                                                                                             409  |                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                412

Chain B from PDB  Type:PROTEIN  Length:549
 aligned with FTHS_MOOTH | P21164 from UniProtKB/Swiss-Prot  Length:559

    Alignment length:551
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556 
           FTHS_MOOTH     7 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDIDADGVITG 557
               SCOP domains d3qusb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.....hhhhhhhh...hhh.eeee...eeee.hhhhhhh......eeeeeee........hhhhhhhhhhhhhhhh...eeeee....hhhhh......eee..eeeehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eee...hhhhh.eee...hhhhh..eee.eee...hhhhhhhhhh.hhhhhhhhhhhheeee.....eee.hhhhhhhhhhhh.......eeeee....eeee.............hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhh....eeeehh--hhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhh.eeee...................eeee...ee.....eeee..............hhhhhhee....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------FTHFS_1    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTHFS_2     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qus B   7 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALS--WAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDIDADGVITG 557
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406  |  | 416       426       436       446       456       466       476       486       496       506       516       526       536       546       556 
                                                                                                                                                                                                                                                                                                                                                                                                                                            409  |                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                               412

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: Nitrogenase iron protein-like (152)

Protein domain: automated matches (19)

Moorella thermoacetica [TaxId: 1525] (7)

1a	d3qusa_	A:
1b	d3qusb_	B:

(no "CATH Domain" information available for 3QUS)

(no "Pfam Domain" information available for 3QUS)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (FTHS_MOOTH | P21164)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0004329	formate-tetrahydrofolate ligase activity	Catalysis of the reaction: ATP + formate + tetrahydrofolate = ADP + phosphate + 10-formyltetrahydrofolate.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0009396	folic acid-containing compound biosynthetic process	The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.
	GO:0006730	one-carbon metabolic process	The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
	GO:0035999	tetrahydrofolate interconversion	The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Val A:120 - Pro A:121	[ RasMol ]
		Val B:120 - Pro B:121	[ RasMol ]

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	6.3.4.3
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	FTHS_MOOTH \| P21164	:	1eg7 1fp7 1fpm 4jim 4jjk 4jjz 4jki

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 12)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (7, 7)

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