1FPM - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   MONOVALENT CATION BINDING SITES IN N10-FORMYLTETRAHYDROFOLATE SYNTHETASE FROM MOORELLA THERMOACETICA

Authors :   R. Radfar, A. Leaphart, J. M. Brewer, W. Minor, J. D. Odom

Date :   31 Aug 00 (Deposition) - 31 Aug 01 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: A (1x),B (1x)

Keywords :   Monovalent Cation, Thermostable, Tetramer, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Radfar, A. Leaphart, J. M. Brewer, W. Minor, J. D. Odom, R. B. Dunlap, C. R. Lovell, L. Lebioda
Cation Binding And Thermostability Of Fthfs Monovalent Cation Binding Sites And Thermostability Of N10-Formyltetrahydrofolate Synthetase From Moorella Thermoacetica.
Biochemistry V. 39 14481 2000
PubMed-ID: 11087401 | Reference-DOI: 10.1021/BI001577W

Molecule 1 - FORMATE--TETRAHYDROFOLATE LIGASE
	Chains	:	A, B
	EC Number	:	6.3.4.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PCRL47 S2A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	MOORELLA THERMOACETICA
	Organism Taxid	:	1525
	Synonym	:	FORMYLTETRAHYDROFOLATE SYNTHETASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 13)

No.	Name	Count	Type	Full Name
1	CS	2	Ligand/Ion	CESIUM ION
2	SO4	11	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 22)

No.	Name	Count	Type	Full Name
1	CS	-1	Ligand/Ion	CESIUM ION
2	SO4	22	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 7)

No.	Name	Count	Type	Full Name
1	CS	-1	Ligand/Ion	CESIUM ION
2	SO4	7	Ligand/Ion	SULFATE ION

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:74 , ARG A:97 , GLY A:303 , PHE A:304	BINDING SITE FOR RESIDUE SO4 A 560
02	AC2	SOFTWARE	LYS B:74 , ARG B:97 , GLY B:303 , PHE B:304	BINDING SITE FOR RESIDUE SO4 B 560
03	AC3	SOFTWARE	ARG A:178 , MET A:533	BINDING SITE FOR RESIDUE SO4 A 561
04	AC4	SOFTWARE	SER A:44 , ASP A:46 , LYS A:256 , HOH A:690	BINDING SITE FOR RESIDUE SO4 A 562
05	AC5	SOFTWARE	ARG A:175 , ARG A:178 , GLY A:537	BINDING SITE FOR RESIDUE SO4 A 563
06	AC6	SOFTWARE	ARG A:319 , ASN A:442 , LEU A:443	BINDING SITE FOR RESIDUE SO4 A 564
07	AC7	SOFTWARE	ASN A:382 , ALA A:383 , TRP A:412 , HOH A:597	BINDING SITE FOR RESIDUE SO4 A 565
08	AC8	SOFTWARE	ASP A:7 , TYR A:116	BINDING SITE FOR RESIDUE SO4 A 566
09	AC9	SOFTWARE	ALA A:188 , ARG B:175 , ARG B:178 , MET B:533	BINDING SITE FOR RESIDUE SO4 B 561
10	BC1	SOFTWARE	SER B:44 , ASP B:46 , LYS B:256	BINDING SITE FOR RESIDUE SO4 B 562
11	BC2	SOFTWARE	ARG B:162 , THR B:163 , ILE B:164 , HOH B:617	BINDING SITE FOR RESIDUE SO4 B 563
12	BC3	SOFTWARE	GLU A:98 , PRO A:99 , ILE A:125 , LEU A:127	BINDING SITE FOR RESIDUE CS A 567
13	BC4	SOFTWARE	GLU B:98 , PRO B:99 , ILE B:125 , ASN B:126 , LEU B:127	BINDING SITE FOR RESIDUE CS B 564

(no "SS Bond" information available for 1FPM)

Asymmetric Unit

No.	Residues
1	Val A:120	-	Pro A:121
2	Val B:120	-	Pro B:121

(no "SAP(SNP)/Variant" information available for 1FPM)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FTHFS_1	PS00721	Formate--tetrahydrofolate ligase signature 1.	FTHS_MOOTH	106-116	2	A:106-116 B:106-116
2	FTHFS_2	PS00722	Formate--tetrahydrofolate ligase signature 2.	FTHS_MOOTH	331-342	2	A:331-342 B:331-342

Biological Unit 1 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FTHFS_1	PS00721	Formate--tetrahydrofolate ligase signature 1.	FTHS_MOOTH	106-116	4	A:106-116 B:106-116
2	FTHFS_2	PS00722	Formate--tetrahydrofolate ligase signature 2.	FTHS_MOOTH	331-342	4	A:331-342 B:331-342

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FTHFS_1	PS00721	Formate--tetrahydrofolate ligase signature 1.	FTHS_MOOTH	106-116	2	A:106-116 B:106-116
2	FTHFS_2	PS00722	Formate--tetrahydrofolate ligase signature 2.	FTHS_MOOTH	331-342	2	A:331-342 B:331-342

(no "Exon" information available for 1FPM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:549
 aligned with FTHS_MOOTH | P21164 from UniProtKB/Swiss-Prot  Length:559

    Alignment length:551
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556 
           FTHS_MOOTH     7 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDIDADGVITG 557
               SCOP domains d1fpma_ A: Formyltetrahydrofolate synthetase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1fpmA01 A:7-131,A:251-445 P-loop containing nucleotide triphosphate hydrolases                                               1fpmA02 A:132-250 Domain 2, N(10)-formyltetrahydrofolate synthetase                                                    1fpmA01 A:7-131,A:251-445 P-loop containing nucleotide triphosphate hydrolases                                                                                                                     1fpmA03 A:446-535 Formyltetrahydrofolate synthetase, domain 3                             ---------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhh...hhh.eee.....eeehhhhhhhhh.....eeeeeee........hhhhhhhhhhhhhhhh...eeeee....hhhhhhhh...eee..eee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eee...hhhhhheee..........eee.eee...hhhhhhhh...hhhhhhhhhh..eeee.....eee.....hhhhhhhhhh......eee.....eeee.............hhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhh......eehh--hhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh....eeeehhhhhhhhhhhhhh.............................eeee...eee...eee................hhhhh.ee....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------FTHFS_1    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTHFS_2     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fpm A   7 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALS--WAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDIDADGVITG 557
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406  |  | 416       426       436       446       456       466       476       486       496       506       516       526       536       546       556 
                                                                                                                                                                                                                                                                                                                                                                                                                                            409  |                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                               412

Chain B from PDB  Type:PROTEIN  Length:548
 aligned with FTHS_MOOTH | P21164 from UniProtKB/Swiss-Prot  Length:559

    Alignment length:550
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557
           FTHS_MOOTH     8 IEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDIDADGVITG 557
               SCOP domains d1fpmb_ B: Formyltetrahydrofolate synthetase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1fpmB01 B:8-131,B:251-445 P-loop containing nucleotide triphosphate hydrolases                                              1fpmB02 B:132-250 Domain 2, N(10)-formyltetrahydrofolate synthetase                                                    1fpmB01 B:8-131,B:251-445 P-loop containing nucleotide triphosphate hydrolases                                                                                                                     1fpmB03 B:446-535 Formyltetrahydrofolate synthetase, domain 3                             ---------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhh...hhh.eee.....eee.hhhhhhh........eeee.........hhhhhhhhhhhhhhhhh..eeeee....hhhhhh..............hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.............eee...hhhhh.eee..........eee.eee...hhhhhhhhh..hhhhhhhhhhh.eeee.....eeehhhhhhhhhhhhhhh................ee.............hhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh....eeee..hhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhh....eeeehh--hhhh...hhhhhhhhhhhhhh.............hhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhh......eee....................eee...ee.....eeee..............hhhhhhee....ee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------FTHFS_1    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTHFS_2     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fpm B   8 IEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALS--WAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDIDADGVITG 557
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407 |  |  417       427       437       447       457       467       477       487       497       507       517       527       537       547       557
                                                                                                                                                                                                                                                                                                                                                                                                                                           409  |                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                              412

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1FPM)

Asymmetric Unit(hide GO term definitions)

Chain A,B (FTHS_MOOTH | P21164)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0004329	formate-tetrahydrofolate ligase activity	Catalysis of the reaction: ATP + formate + tetrahydrofolate = ADP + phosphate + 10-formyltetrahydrofolate.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0009396	folic acid-containing compound biosynthetic process	The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.
	GO:0006730	one-carbon metabolic process	The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
	GO:0035999	tetrahydrofolate interconversion	The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.

Asymmetric Unit
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	Cis Peptide Bonds
		Val A:120 - Pro A:121	[ RasMol ]
		Val B:120 - Pro B:121	[ RasMol ]

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	FTHS_MOOTH \| P21164	:	1eg7 1fp7 3qus 4jim 4jjk 4jjz 4jki

1fp7	MONOVALENT CATION BINDING SITES IN N10- FORMYLTETRAHYDROFOLATE SYNTHETASE FROM MOORELLA THERMOACETICA

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 13)

Sites (13, 13)

SS Bonds (0, 0)

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