4JIM - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   NATIVE CRYSTAL STRUCUTRE OF N10-FORMYLTETRAHYDROFOLATE SYNTHETASE

Authors :   L. R. Celeste, L. L. Lovelace, L. Lebioda

Date :   06 Mar 13 (Deposition) - 20 Mar 13 (Release) - 20 Mar 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)
Biol. Unit 3: A,B  (2x)

Keywords :   Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. R. Celeste, G. Chai, M. Bielak, W. Minor, L. L. Lovelace, L. Lebioda
Mechanism Of N10-Formyltetrahydrofolate Synthetase Derived From Complexes With Intermediates And Inhibitors.
Protein Sci. V. 21 219 2012
PubMed-ID: 22109967 | Reference-DOI: 10.1002/PRO.2005

Molecule 1 - FORMATE--TETRAHYDROFOLATE LIGASE
	Chains	:	A, B
	EC Number	:	6.3.4.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PALTER-1
	Expression System Strain	:	Y1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FHS, MOORELLA, MOTH_0109
	Organism Scientific	:	MOORELLA THERMOACETICA
	Organism Taxid	:	264732
	Strain	:	ATCC 39073
	Synonym	:	FORMYLTETRAHYDROFOLATE SYNTHETASE, FHS, FTHFS

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B
Biological Unit 3 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 11)

No.	Name	Count	Type	Full Name
1	SO4	8	Ligand/Ion	SULFATE ION
2	TOE	3	Ligand/Ion	2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL

Biological Unit 1 (2, 11)

No.	Name	Count	Type	Full Name
1	SO4	8	Ligand/Ion	SULFATE ION
2	TOE	3	Ligand/Ion	2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL

Biological Unit 2 (2, 22)

No.	Name	Count	Type	Full Name
1	SO4	16	Ligand/Ion	SULFATE ION
2	TOE	6	Ligand/Ion	2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL

Biological Unit 3 (2, 22)

No.	Name	Count	Type	Full Name
1	SO4	16	Ligand/Ion	SULFATE ION
2	TOE	6	Ligand/Ion	2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:162 , ILE A:164 , GLU A:194	BINDING SITE FOR RESIDUE TOE A 701
02	AC2	SOFTWARE	GLY A:481 , TYR A:482	BINDING SITE FOR RESIDUE TOE A 702
03	AC3	SOFTWARE	LYS A:74 , ARG A:97 , PHE A:304 , HOH A:1011	BINDING SITE FOR RESIDUE SO4 A 703
04	AC4	SOFTWARE	ARG A:175 , ARG A:178 , MET A:533 , GLY A:537 , HOH A:1174 , HOH B:701	BINDING SITE FOR RESIDUE SO4 A 704
05	AC5	SOFTWARE	SER A:446 , LYS A:448 , ARG A:505 , ARG A:507 , HOH A:904 , HOH A:997 , HOH A:1039 , HOH A:1190	BINDING SITE FOR RESIDUE SO4 A 705
06	AC6	SOFTWARE	SER A:44 , LYS A:256 , HOH A:1000 , HOH A:1088	BINDING SITE FOR RESIDUE SO4 A 706
07	AC7	SOFTWARE	LYS A:448 , TYR A:466 , ARG A:507 , HOH A:987 , HOH A:1154	BINDING SITE FOR RESIDUE SO4 A 707
08	AC8	SOFTWARE	ARG B:162 , ILE B:164 , GLU B:194 , HOH B:741 , HOH B:836	BINDING SITE FOR RESIDUE TOE B 601
09	AC9	SOFTWARE	ALA A:188 , ARG B:175 , ARG B:178 , MET B:533 , GLY B:537	BINDING SITE FOR RESIDUE SO4 B 602
10	BC1	SOFTWARE	LYS B:74 , ARG B:97 , GLY B:303 , PHE B:304 , HOH B:807	BINDING SITE FOR RESIDUE SO4 B 603
11	BC2	SOFTWARE	SER B:44 , LYS B:256 , HOH B:818 , HOH B:827	BINDING SITE FOR RESIDUE SO4 B 604

(no "SS Bond" information available for 4JIM)

Asymmetric Unit

No.	Residues
1	Lys A:108	-	Gly A:109
2	Val A:120	-	Pro A:121
3	Val B:120	-	Pro B:121

(no "SAP(SNP)/Variant" information available for 4JIM)

(no "PROSITE Motif" information available for 4JIM)

(no "Exon" information available for 4JIM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:557
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4jima_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh...hhhhhhhhh..hhh.eee.....eee.hhhhhhh......eeeeeee........hhhhhhhhhhhhhhhh...eeeee....hhhhhh.....eee..eeeehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eee...hhhhh.eee..........eee.eee...hhhhhhhhhh.hhhhhhhhhhhheeee.....eee.hhhhhhhhhhhhh......eeeee....eeee.............hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhh....eeeeeehhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhh.............................eee.eeeee....eeeee.............hhhhhhee.....ee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jim A   3 KVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGAGFIVPITGAIMTMPGLPKRPAACNIDIDADGVITGLF 559
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552

Chain B from PDB  Type:PROTEIN  Length:555
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4jimb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...hhhhhhhhh..hhh.eeee...eeee.hhhhhhh......eeeeeee........hhhhhhhhhhhhhhhh...eeeee....hhhhhh.....eee..eeeehhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhh...eee...hhhhh.eee..........eee.eee...hhhhhhhhhh.hhhhhhhhhhh.eeee.....eee.....hhhhhhhhh......eeeee....eeee.............hhhhhhhhhhhh.eeeee......hhhhhhhhhhhhhhh....eeeeeehhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh.....eeehhhhhhhhhhhhhh..............................eee.eeeee....eeeee.............hhhhhhee.....ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jim B   5 PSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSEVWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGAGFIVPITGAIMTMPGLPKRPAACNIDIDADGVITGLF 559
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: Nitrogenase iron protein-like (152)

Protein domain: automated matches (19)

Moorella thermoacetica [TaxId: 1525] (7)

1a	d4jima_	A:
1b	d4jimb_	B:

(no "CATH Domain" information available for 4JIM)

(no "Pfam Domain" information available for 4JIM)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Lys A:108 - Gly A:109	[ RasMol ]
		Val A:120 - Pro A:121	[ RasMol ]
		Val B:120 - Pro B:121	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

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	6.3.4.3
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UniProtKB/Swiss-Prot
	FTHS_MOOTA \| Q2RM91	:	4ioj 4iok 4iol 4iom 4jjk 4jjz 4jki
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (7, 14)

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