4IRW - JenaLib

Title :   CO-CRYSTALLIZATION OF STREPTAVIDIN-BIOTIN COMPLEX WITH A LANTHANIDE-LIGAND COMPLEX GIVES RISE TO A NOVEL CRYSTAL FORM

Authors :   R. A. M. S. S. Bandara, D. Q. Liu, A. Hindupur, K. F. Tesh, R. O. Fox

Date :   15 Jan 13 (Deposition) - 29 Jan 14 (Release) - 29 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Beta Barrel, Biotin Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. A. M. S. S. Bandara, D. Q. Liu, A. Hindupur, K. F. Tesh, R. O. Fox
Co-Crystallization Of Streptavidin-Biotin Complex With A Lanthanide-Ligand Complex Gives Rise To A Novel Crystal For
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 19)

Sites (19, 19)

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:77 , PDC A:204 , PDC A:208 , TB A:216 , HOH A:361 , HOH A:401	BINDING SITE FOR RESIDUE PDC A 201
02	AC2	SOFTWARE	GLY A:1 , ARG A:43 , PDC A:206 , PDC A:207 , TB A:215 , HOH A:357 , HOH A:405	BINDING SITE FOR RESIDUE PDC A 202
03	AC3	SOFTWARE	GLY A:38 , ASN A:39 , TRP A:110 , LYS A:111 , PDC A:209 , PDC A:210 , TB A:218	BINDING SITE FOR RESIDUE PDC A 203
04	AC4	SOFTWARE	ASN A:71 , TYR A:73 , ARG A:74 , ASN A:75 , PDC A:201 , PDC A:208 , TB A:216 , HOH A:336	BINDING SITE FOR RESIDUE PDC A 204
05	AC5	SOFTWARE	GLU A:34 , GLU A:41 , SER A:42 , PDC A:206 , TB A:214 , HOH A:330 , HOH A:384	BINDING SITE FOR RESIDUE PDC A 205
06	AC6	SOFTWARE	GLU A:34 , GLU A:41 , SER A:42 , ARG A:43 , TYR A:73 , PDC A:202 , PDC A:205 , TB A:214 , HOH A:343	BINDING SITE FOR RESIDUE PDC A 206
07	AC7	SOFTWARE	GLY A:1 , ALA A:2 , PDC A:202 , TB A:215 , HOH A:344 , HOH A:364 , HOH A:381 , HOH A:399	BINDING SITE FOR RESIDUE PDC A 207
08	AC8	SOFTWARE	ARG A:74 , ASN A:75 , PDC A:201 , PDC A:204 , TB A:216	BINDING SITE FOR RESIDUE PDC A 208
09	AC9	SOFTWARE	LYS A:111 , PDC A:203 , PDC A:210 , TB A:218	BINDING SITE FOR RESIDUE PDC A 209
10	BC1	SOFTWARE	ASN A:39 , SER A:102 , LYS A:111 , LEU A:114 , PDC A:203 , PDC A:209 , BTN A:213 , TB A:218 , HOH A:375 , HOH A:414	BINDING SITE FOR RESIDUE PDC A 210
11	BC2	SOFTWARE	ASP A:26 , ARG A:49 , PDC A:212 , TB A:217 , HOH A:369	BINDING SITE FOR RESIDUE PDC A 211
12	BC3	SOFTWARE	GLY A:24 , ALA A:25 , ASP A:26 , GLY A:27 , ALA A:28 , THR A:30 , VAL A:45 , THR A:47 , ARG A:49 , PDC A:211 , TB A:217 , HOH A:403 , HOH A:415	BINDING SITE FOR RESIDUE PDC A 212
13	BC4	SOFTWARE	ASN A:13 , LEU A:15 , SER A:17 , TYR A:33 , SER A:35 , VAL A:37 , ASN A:39 , TRP A:69 , ALA A:76 , SER A:78 , THR A:80 , TRP A:98 , LEU A:100 , ASP A:118 , PDC A:210	BINDING SITE FOR RESIDUE BTN A 213
14	BC5	SOFTWARE	PDC A:205 , PDC A:206	BINDING SITE FOR RESIDUE TB A 214
15	BC6	SOFTWARE	PDC A:202 , PDC A:207	BINDING SITE FOR RESIDUE TB A 215
16	BC7	SOFTWARE	PDC A:201 , PDC A:204 , PDC A:208	BINDING SITE FOR RESIDUE TB A 216
17	BC8	SOFTWARE	PDC A:211 , PDC A:212	BINDING SITE FOR RESIDUE TB A 217
18	BC9	SOFTWARE	PDC A:203 , PDC A:209 , PDC A:210	BINDING SITE FOR RESIDUE TB A 218
19	CC1	SOFTWARE	THR A:47 , GLY A:48 , THR A:66	BINDING SITE FOR RESIDUE NA A 219

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains d4irwa_ A: Streptavidin                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhheeeee....eeeeee....eeeeeee.........eeeeeee..........eeeeeeeeee....eeeeeeeeeeeee.....eeeeeeeeee.....hhhh.eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4irw A   1 GAAEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKV 123
                                    10        20        30        40        50        60        70        80        90       100       110       120

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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