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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ZAIRE EBOLAVIRUS VP35 INTERFERON INHIBITORY DOMAIN K222A/R225A/K248A/K251A MUTANT
 
Authors :  J. B. Binning, T. Wang, D. W. Leung, W. Xu, D. Borek, G. K. Amarasinghe
Date :  21 Dec 12  (Deposition) - 09 Oct 13  (Release) - 11 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.51
Chains :  Asym./Biol. Unit :  A
Keywords :  Ifn Inhibition, Polymerase Cofactor, Rna Binding Protein, Interferon Antagonism, Dsrna, Virus, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Binning, T. Wang, P. Luthra, R. S. Shabman, D. M. Borek, G. Liu, W. Xu, D. W. Leung, C. F. Basler, G. K. Amarasinghe
Development Of Rna Aptamers Targeting Ebola Virus Vp35.
Biochemistry V. 52 8406 2013
PubMed-ID: 24067086  |  Reference-DOI: 10.1021/BI400704D

(-) Compounds

Molecule 1 - POLYMERASE COFACTOR VP35
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: INTERFERON INHIBITORY DOMAIN (UNP RESIDUES 218-340)
    Gene: VP35
    Mutation: YES
    Organism Common: ZEBOV
    Organism Scientific: ZAIRE EBOLAVIRUS
    Organism Taxid: 128952
    Strain: MAYINGA-76

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4IJF)

(-) Sites  (0, 0)

(no "Site" information available for 4IJF)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:275 -A:275

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:269 -Gly A:270

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IJF)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhh.ee......hhhh.eeeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ijf A 218 DISAADLANIMYDHLPGFGTAFHQLVQVICALGADSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAAPPVIHIRSRGDIPRACQKSLRPVPPSPKIDRGWVCVFQLQDGKTLGLKI 340
                                   227       237       247       257       267       277       287       297       307       317       327       337
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IJF)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:269 - Gly A:270   [ RasMol ]  
 

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  4ijf
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  VP35_EBOZM | Q05127
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  VP35_EBOZM | Q05127
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VP35_EBOZM | Q05127: 3fke 3l25 3l26 3l27 3l28 3l29 4ibb 4ibc 4ibd 4ibe 4ibf 4ibg 4ibi 4ibj 4ibk 4ije 4ypi 4zta 4ztg 4zti

(-) Related Entries Specified in the PDB File

3fke ZAIRE EBOV VP35 IID WILDTYPE
4ije