4IJE - JenaLib

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Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE ZAIRE EBOLAVIRUS VP35 INTERFERON INHIBITORY DOMAIN R312A/K319A/R322A MUTANT

Authors :   J. B. Binning, T. Wang, D. W. Leung, W. Xu, D. Borek, G. K. Amarasinghe

Date :   21 Dec 12 (Deposition) - 09 Oct 13 (Release) - 11 Dec 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Ifn Inhibition, Polymerase Cofactor, Rna Binding Protein, Interferon Antagonism, Virus, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. M. Binning, T. Wang, P. Luthra, R. S. Shabman, D. M. Borek, G. Liu, W. Xu, D. W. Leung, C. F. Basler, G. K. Amarasinghe
Development Of Rna Aptamers Targeting Ebola Virus Vp35.
Biochemistry V. 52 8406 2013
PubMed-ID: 24067086 | Reference-DOI: 10.1021/BI400704D

Molecule 1 - POLYMERASE COFACTOR VP35
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	INTERFERON INHIBITORY DOMAIN (UNP RESIDUES 218-340)
	Gene	:	VP35
	Mutation	:	YES
	Organism Common	:	ZEBOV
	Organism Scientific	:	ZAIRE EBOLAVIRUS
	Organism Taxid	:	128952
	Strain	:	MAYINGA-76

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 9)

No.	Name	Count	Type	Full Name
1	K	1	Ligand/Ion	POTASSIUM ION
2	NA	5	Ligand/Ion	SODIUM ION
3	PO4	3	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	PO4	-1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:233 , THR A:237 , HOH A:509	BINDING SITE FOR RESIDUE NA A 401
2	AC2	SOFTWARE	LEU A:232 , PRO A:233 , GLY A:234 , HOH A:503 , HOH A:583 , LEU C:232 , GLY C:234	BINDING SITE FOR RESIDUE K A 402
3	AC3	SOFTWARE	PRO B:233 , THR B:237 , HOH B:507	BINDING SITE FOR RESIDUE NA B 401
4	AC4	SOFTWARE	PRO B:315 , PRO B:316 , HOH B:547 , PRO C:315 , PRO C:316 , HOH C:537	BINDING SITE FOR RESIDUE NA B 402
5	AC5	SOFTWARE	ILE B:227 , HIS B:231 , GLN B:264 , HOH B:565 , HOH B:580	BINDING SITE FOR RESIDUE PO4 B 403
6	AC6	SOFTWARE	ILE C:227 , HIS C:231 , GLN C:264 , HOH C:583	BINDING SITE FOR RESIDUE PO4 C 401
7	AC7	SOFTWARE	GLY B:234 , TYR D:229 , LEU D:232 , GLY D:234 , HIS D:240 , HOH D:586 , HOH D:590	BINDING SITE FOR RESIDUE NA D 401
8	AC8	SOFTWARE	PRO D:233 , THR D:237 , HOH D:507	BINDING SITE FOR RESIDUE NA D 402
9	AC9	SOFTWARE	ILE D:227 , HIS D:231 , GLN D:264 , HOH D:534 , HOH D:545	BINDING SITE FOR RESIDUE PO4 D 403

(no "SS Bond" information available for 4IJE)

(no "Cis Peptide Bond" information available for 4IJE)

(no "SAP(SNP)/Variant" information available for 4IJE)

(no "PROSITE Motif" information available for 4IJE)

(no "Exon" information available for 4IJE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhh.ee......hhhh.eeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ije A 217 PDISAKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAAPPVIHIRSRGDIPRACQKSLAPVPPSPAIDAGWVCVFQLQDGKTLGLKI 340
                                   226       236       246       256       266       276       286       296       306       316       326       336

Chain B from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhh.ee......hhhh.eeeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ije B 217 PDISAKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAAPPVIHIRSRGDIPRACQKSLAPVPPSPAIDAGWVCVFQLQDGKTLGLKI 340
                                   226       236       246       256       266       276       286       296       306       316       326       336

Chain C from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhh..ee......hhhh.eeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ije C 217 PDISAKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAAPPVIHIRSRGDIPRACQKSLAPVPPSPAIDAGWVCVFQLQDGKTLGLKI 340
                                   226       236       246       256       266       276       286       296       306       316       326       336

Chain D from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhh.ee......hhhh.eeeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ije D 217 PDISAKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAAPPVIHIRSRGDIPRACQKSLAPVPPSPAIDAGWVCVFQLQDGKTLGLKI 340
                                   226       236       246       256       266       276       286       296       306       316       326       336

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4IJE)

(no "CATH Domain" information available for 4IJE)

(no "Pfam Domain" information available for 4IJE)

Asymmetric Unit(hide GO term definitions)

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3fke	ZAIRE EBOV VP35 IID WILDTYPE
3l25
3l26
3l27
3l28
3l29
4ijf

Description

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Ligands, Modified Residues, Ions (3, 9)

Sites (9, 9)

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