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(-) Description

Title :  TYK2 (JH1) IN COMPLEX WITH ADENOSINE DI-PHOSPHATE
 
Authors :  J. Liang, A. V. Abbema, L. Bao, K. Barrett, M. Beresini, L. Berezhkovski W. Blair, C. Chang, J. Driscoll, C. Eigenbrot, N. Ghilardi, P. Gibbons J. Halladay, A. Johnson, P. B. Kohli, Y. Lai, M. Liimatta, P. Mantik, K. Menghrajani, J. Murray, A. Sambrone, Y. Shao, S. Shia, Y. Shin, J. Sm S. Sohn, M. Stanley, V. Tsui, M. Ultsch, L. Wu, B. Zhang, S. Magnuson
Date :  30 Aug 12  (Deposition) - 14 Aug 13  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Liang, V. Tsui, A. Van Abbema, L. Bao, K. Barrett, M. Beresini, L. Berezhkovskiy, W. S. Blair, C. Chang, J. Driscoll, C. Eigenbrot, N. Ghilardi, P. Gibbons, J. Halladay, A. Johnson, P. B. Kohli, Y. Lai, M. Liimatta, P. Mantik, K. Menghrajani, J. Murray, A. Sambrone, Y. Xiao, S. Shia, Y. Shin, J. Smith, S. Sohn, M. Stanley, M. Ultsch, B. Zhang, L. C. Wu, S. Magnuson
Lead Identification Of Novel And Selective Tyk2 Inhibitors.
Eur. J. Med. Chem. V. 67 175 2013
PubMed-ID: 23867602  |  Reference-DOI: 10.1016/J.EJMECH.2013.03.070

(-) Compounds

Molecule 1 - NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2
    ChainsA
    EC Number2.7.10.2
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineTNI
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentKINASE DOMAIN, UNP RESIDUES 885-1176
    GeneTYK2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:911 , ALA A:928 , LYS A:930 , GLU A:979 , TYR A:980 , VAL A:981 , ASP A:988 , ARG A:1027 , ASN A:1028 , LEU A:1030 , ASP A:1041 , MG A:1202 , MG A:1203 , HOH A:1301 , HOH A:1312 , HOH A:1316 , HOH A:1325 , HOH A:1330 , HOH A:1342 , HOH A:1344 , HOH A:1348 , HOH A:1355BINDING SITE FOR RESIDUE ADP A 1201
2AC2SOFTWAREASP A:1023 , ASP A:1041 , ADP A:1201 , MG A:1203 , HOH A:1325 , HOH A:1343 , HOH A:1344BINDING SITE FOR RESIDUE MG A 1202
3AC3SOFTWAREASN A:1028 , ASP A:1041 , ADP A:1201 , MG A:1202 , HOH A:1301 , HOH A:1342BINDING SITE FOR RESIDUE MG A 1203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GVJ)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Glu A:905 -Gly A:906
2His A:907 -Phe A:908
3Ala A:971 -Ala A:972

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4GVJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4gvja_ A: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhh.eeeeeeee....eeeeeeee........eeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeeeee....eeeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee.......hhhhhhhhhhhhheeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gvj A  889 PTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYRH 1178
                                   898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GVJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GVJ)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:971 - Ala A:972   [ RasMol ]  
    Glu A:905 - Gly A:906   [ RasMol ]  
    His A:907 - Phe A:908   [ RasMol ]  
 

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  TYK2_HUMAN | P29597
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYK2_HUMAN | P295973lxn 3lxp 3nyx 3nz0 3zon 4gfo 4gih 4gii 4gj2 4gj3 4oli 4po6 4py1 4wov 5c01 5c03 5f1z 5f20 5tkd

(-) Related Entries Specified in the PDB File

4gfm 4gfo 4gih 4gii 4gj2 4gj3 4gmy