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(-) Description

Title :  CRYSTAL STRUCTURE OF TYK2 IN COMPLEX WITH COMPOUND 15, 6-((2,5-DIMETHOXYPHENYL)THIO)-3-(1-METHYL-1H-PYRAZOL-4-YL)-[1,2,4]TRIAZOLO[4, 3-B]PYRIDAZINE
 
Authors :  S. Han, J. D. Knafels
Date :  25 Mar 14  (Deposition) - 03 Sep 14  (Release) - 17 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Galatsis, J. L. Henderson, B. L. Kormos, S. Han, R. G. Kurumbail, T. T. Wager, P. R. Verhoest, G. S. Noell, Y. Chen, E. Needle, Z. Berger, S. J. Steyn, C. Houle, W. D. Hirst
Kinase Domain Inhibition Of Leucine Rich Repeat Kinase 2 (Lrrk2) Using A [1, 2, 4]Triazolo[4, 3-B]Pyridazine Scaffold.
Bioorg. Med. Chem. Lett. V. 24 4132 2014
PubMed-ID: 25113930  |  Reference-DOI: 10.1016/J.BMCL.2014.07.052

(-) Compounds

Molecule 1 - NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TYK2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
12YK1Ligand/Ion6-[(2,5-DIMETHOXYPHENYL)SULFANYL]-3-(1-METHYL-1H-PYRAZOL-4-YL)[1,2,4]TRIAZOLO[4,3-B]PYRIDAZINE
2PTR1Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:903 , GLY A:904 , GLY A:909 , LYS A:910 , VAL A:911 , ALA A:928 , LYS A:930 , MET A:978 , GLU A:979 , VAL A:981 , ARG A:1027 , LEU A:1030 , GLY A:1040 , ASP A:1041 , HOH A:1392BINDING SITE FOR RESIDUE 2YK A 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PY1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PY1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PY1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PY1)

(-) Exons   (0, 0)

(no "Exon" information available for 4PY1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhh.eeeeeeeee...eeeeeeee........eeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeeeee....eeeeeee.....hhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee.......hhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4py1 A  889 PTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEyYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG 1178
                                   898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048     |1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178
                                                                                                                                                                                              1054-PTR
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PY1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PY1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PY1)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  TYK2_HUMAN | P29597
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYK2_HUMAN | P29597: 3lxn 3lxp 3nyx 3nz0 3zon 4gfo 4gih 4gii 4gj2 4gj3 4gvj 4oli 4po6 4wov 5c01 5c03 5f1z 5f20 5tkd

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4PY1)