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(-) Description

Title :  TYK2 (JH1) IN COMPLEX WITH 2,6-DICHLORO-4-CYANO-N-[2-({[(1R,2R)-2-FLUOROCYCLOPROPYL]CARBONYL}AMINO)PYRIDIN-4-YL]BENZAMIDE
 
Authors :  M. H. Ultsch
Date :  09 Aug 12  (Deposition) - 29 May 13  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Atp Binding, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Liang, A. Van Abbema, M. Balazs, K. Barrett, L. Berezhkovsky, W. Blair, C. Chang, D. Delarosa, J. Devoss, J. Driscoll, C. Eigenbrot, N. Ghilardi, P. Gibbons, J. Halladay, A. Johnson, P. B. Kohli, Y. Lai, Y. Liu, J. Lyssikatos, P. Mantik, K. Menghrajani, J. Murray, I. Peng, A. Sambrone, S. Shia, Y. Shin, J. Smith, S. Sohn, V. Tsui, M. Ultsch, L. C. Wu, Y. Xiao, W. Yang, J. Young, B. Zhang, B. Y. Zhu, S. Magnuson
Lead Optimization Of A 4-Aminopyridine Benzamide Scaffold T Identify Potent, Selective, And Orally Bioavailable Tyk2 Inhibitors.
J. Med. Chem. V. 56 4521 2013
PubMed-ID: 23668484  |  Reference-DOI: 10.1021/JM400266T

(-) Compounds

Molecule 1 - NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: KINASE DOMAIN, UNP RESIDUES 885-1176
    Gene: TYK2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
10XP1Ligand/Ion2,6-DICHLORO-4-CYANO-N-[2-({[(1R,2R)-2-FLUOROCYCLOPROPYL]CARBONYL}AMINO)PYRIDIN-4-YL]BENZAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:901 , LEU A:903 , GLY A:904 , GLU A:905 , VAL A:911 , ALA A:928 , TYR A:980 , VAL A:981 , PRO A:982 , GLY A:984 , ARG A:1027 , ASN A:1028 , LEU A:1030 , ASP A:1041BINDING SITE FOR RESIDUE 0XP A 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GJ3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GJ3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GJ3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GJ3)

(-) Exons   (0, 0)

(no "Exon" information available for 4GJ3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4gj3a_ A: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eehhh.eeeeeeeee...eeeeeeee........eeeeeeee....hhhhhhhhhhhhhhhhh........eeeeee......eeeeee....eehhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee........eeeee..eeee......ee......eee.......hhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhh.....hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4gj3 A  890 TVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYR 1177
                                   899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GJ3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GJ3)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  4gj3
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  TYK2_HUMAN | P29597
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYK2_HUMAN | P29597: 3lxn 3lxp 3nyx 3nz0 3zon 4gfo 4gih 4gii 4gj2 4gvj 4oli 4po6 4py1 4wov 5c01 5c03 5f1z 5f20 5tkd

(-) Related Entries Specified in the PDB File

4gih THE SAME PROTEIN COMPLEXED WITH CMP 46
4gii THE SAME PROTEIN COMPLEXED WITH CMP 19
4gj2 THE SAME PROTEIN COMPLEXED WITH CMP 23
4gvj THE SAME PROTEIN COMPLEXED WITH ADENOSINE DI-PHOSPHATE