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(-) Description

Title :  TYK2 KINASE (JH1 DOMAIN) WITH 2,6-DICHLORO-N-(2-OXO-2,5-DIHYDROPYRIDIN-4-YL)BENZAMIDE
 
Authors :  C. Eigenbrot, M. Ultsch
Date :  03 Aug 12  (Deposition) - 19 Jun 13  (Release) - 07 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase, Phosphotransfer Catalyst, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Liang, V. Tsui, A. Van Abbema, L. Bao, K. Barrett, M. Beresini, L. Berezhkovskiy, W. S. Blair, C. Chang, J. Driscoll, C. Eigenbrot, N. Ghilardi, P. Gibbons, J. Halladay, A. Johnson, P. B. Kohli, Y. Lai, M. Liimatta, P. Mantik, K. Menghrajani, J. Murray, A. Sambrone, Y. Xiao, S. Shia, Y. Shin, J. Smith, S. Sohn, M. Stanley, M. Ultsch, B. Zhang, L. C. Wu, S. Magnuson
Lead Identification Of Novel And Selective Tyk2 Inhibitors.
Eur. J. Med. Chem. V. 67 175 2013
PubMed-ID: 23867602  |  Reference-DOI: 10.1016/J.EJMECH.2013.03.070

(-) Compounds

Molecule 1 - NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: JH1 DOMAIN, UNP RESIDUES 884-1176
    Gene: TYK2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
10X21Ligand/Ion2,6-DICHLORO-N-(2-OXO-2,5-DIHYDROPYRIDIN-4-YL)BENZAMIDE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:993 , SER A:994BINDING SITE FOR RESIDUE SO4 A 1201
2AC2SOFTWAREARG A:1056 , ARG A:1136 , CYS A:1142 , TYR A:1145 , HIS A:1146 , HOH A:1320 , HOH A:1370BINDING SITE FOR RESIDUE SO4 A 1202
3AC3SOFTWAREARG A:1022 , TYR A:1055 , ARG A:1058 , GLU A:1059BINDING SITE FOR RESIDUE EDO A 1203
4AC4SOFTWAREARG A:1027 , TRP A:1067 , HOH A:1326BINDING SITE FOR RESIDUE EDO A 1204
5AC5SOFTWAREGLN A:946 , LYS A:1046 , TYR A:1055 , ARG A:1058 , LYS A:1139BINDING SITE FOR RESIDUE GOL A 1205
6AC6SOFTWARELEU A:903 , GLY A:904 , GLU A:905 , GLY A:906 , VAL A:911 , ALA A:928 , GLU A:979 , TYR A:980 , VAL A:981 , ARG A:1027 , ASN A:1028 , LEU A:1030 , HOH A:1378BINDING SITE FOR RESIDUE 0X2 A 1206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GFO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GFO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GFO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GFO)

(-) Exons   (0, 0)

(no "Exon" information available for 4GFO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4gfoa_ A: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee....eeeeeee........eeeeeee..hhhhhhhhh........eeeee..eeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......eee.......hhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gfo A  890 TVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALWKQEIDILRTLYHEHIIKYKGCCELQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHSQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPCEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYRH 1178
                                   899       909       919       929  ||   950       960      |976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176  
                                                                    932|                    967|                                                                                                                                                                                                            
                                                                     944                     974
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GFO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GFO)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  TYK2_HUMAN | P29597
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYK2_HUMAN | P29597: 3lxn 3lxp 3nyx 3nz0 3zon 4gih 4gii 4gj2 4gj3 4gvj 4oli 4po6 4py1 4wov 5c01 5c03 5f1z 5f20 5tkd

(-) Related Entries Specified in the PDB File

4gfm 4gih 4gmy