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(-) Description

Title :  STRUCTURE OF TYK2 WITH INHIBITOR 16: 3-AZANYL-5-[(2~{S})-3-METHYLBUTAN-2-YL]-7-[1-METHYL-5-(2-OXIDANYLPROPAN-2-YL)PYRAZOL-3-YL]-1~{H}-PYRAZOLO[4,3-C]PYRIDIN-4-ONE
 
Authors :  R. J. Skene
Date :  01 Dec 15  (Deposition) - 13 Jan 16  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Complex, Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Yogo, H. Nagamiya, M. Seto, S. Sasaki, H. Shih-Chung, Y. Ohba, N. Tokunaga, G. N. Lee, C. Y. Rhim, C. H. Yoon, S. Y. Cho, R. Skene, S. Yamamoto, Y. Satou, M. Kuno, T. Miyazaki, H. Nakagawa, A. Okabe, S. Marui, K. Aso, M. Yoshida
Structure-Based Design And Synthesis Of 3-Amino-1, 5-Dihydro-4H-Pyrazolopyridin-4-One Derivatives As Tyrosine Kinase 2 Inhibitors.
J. Med. Chem. V. 59 733 2016
PubMed-ID: 26701356  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01857

(-) Compounds

Molecule 1 - NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Taxid: 10469
    Gene: TYK2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
15U31Ligand/Ion3-AZANYL-5-[(2~{S})-3-METHYLBUTAN-2-YL]-7-[1-METHYL-5-(2-OXIDANYLPROPAN-2-YL)PYRAZOL-3-YL]-1~{H}-PYRAZOLO[4,3-C]PYRIDIN-4-ONE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:903 , ALA A:928 , ILE A:960 , GLU A:979 , TYR A:980 , VAL A:981 , PRO A:982 , GLY A:984 , ASN A:1028 , LEU A:1030 , HOH A:1343binding site for residue 5U3 A 1200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F1Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5F1Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F1Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F1Z)

(-) Exons   (0, 0)

(no "Exon" information available for 5F1Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.eeeeeeeeee..eeeeeeee........eeeeeeee....hhhhhhhh.........eeeee....eeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......eee.......hhhhhhhhhhhhheeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5f1z A  886 ASDPTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKSGWKQEIDILRTLYHEHIIKYKGCCEDKSLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHSQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPCEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYH 1177
                                   895       905       915       925       943       953       963    || 976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176 
                                                                         933|                       968|                                                                                                                                                                                                             
                                                                          942                        972
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F1Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F1Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F1Z)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  5f1z
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  TYK2_HUMAN | P29597
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYK2_HUMAN | P29597: 3lxn 3lxp 3nyx 3nz0 3zon 4gfo 4gih 4gii 4gj2 4gj3 4gvj 4oli 4po6 4py1 4wov 5c01 5c03 5f20 5tkd

(-) Related Entries Specified in the PDB File

5f20