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Title :   CYSTAL STRUCTURE OF LOCKED-TRIMER OF HUMAN MIF

Authors :   C. Fan, E. Lolis

Date :   29 Aug 12 (Deposition) - 03 Jul 13 (Release) - 24 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.33

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)
Biol. Unit 3: G,H,I  (1x)

Keywords :   Alpha/Beta Mixture, Cytokine And Isomerase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Fan, D. Rajasekaran, M. A. Syed, L. Leng, J. P. Loria, V. Bhandari, R. Bucala, E. J. Lolis
Mif Intersubunit Disulfide Mutant Antagonist Supports Activation Of Cd74 By Endogenous Mif Trimer At Physiologic Concentrations.
Proc. Natl. Acad. Sci. Usa V. 110 10994 2013
PubMed-ID: 23776208 | Reference-DOI: 10.1073/PNAS.1221817110

Molecule 1 - MACROPHAGE MIGRATION INHIBITORY FACTOR
	Chains	:	A, B, C, D, E, F, G, H, I
	EC Number	:	5.3.2.1, 5.3.3.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11B(+)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PET11B(+)
	Gene	:	MIF
	Mutation	:	YES
	Organism Common	:	RHESUS MACAQUE,RHESUS MACAQUES,RHESUS MONKEYS
	Organism Scientific	:	MACACA MULATTA
	Organism Taxid	:	9544
	Strain	:	HUMAN
	Synonym	:	MIF, L-DOPACHROME ISOMERASE, L-DOPACHROME TAUTOMERASE, PHENYLPYRUVATE TAUTOMERASE

		1	2	3	4	5	6	7	8	9
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F
Biological Unit 3 (1x)	:							G	H	I

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 8)

No.	Name	Count	Type	Full Name
1	CL	8	Ligand/Ion	CHLORIDE ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:77	BINDING SITE FOR RESIDUE CL A 201
2	AC2	SOFTWARE	GLY C:17	BINDING SITE FOR RESIDUE CL C 201
3	AC3	SOFTWARE	ARG C:73 , GLY F:17 , LEU F:19	BINDING SITE FOR RESIDUE CL C 202
4	AC4	SOFTWARE	ARG A:73 , GLY D:17 , LEU D:19	BINDING SITE FOR RESIDUE CL D 201
5	AC5	SOFTWARE	GLY A:17 , ARG D:73	BINDING SITE FOR RESIDUE CL D 202
6	AC6	SOFTWARE	LYS B:32 , LYS D:77	BINDING SITE FOR RESIDUE CL D 203
7	AC7	SOFTWARE	ASN E:102	BINDING SITE FOR RESIDUE CL E 201
8	AC8	SOFTWARE	GLY I:17 , ARG I:73	BINDING SITE FOR RESIDUE CL I 201

Asymmetric Unit

No.	Residues
1	A:80	-	B:110
2	A:110	-	C:80
3	B:80	-	C:110
4	D:80	-	E:110
5	D:110	-	F:80
6	E:80	-	F:110
7	G:80	-	H:110
8	G:110	-	I:80
9	H:80	-	I:110

Asymmetric Unit

No.	Residues
1	Ala C:104	-	Asn C:105
2	Ile D:64	-	Gly D:65
3	Ala E:103	-	Ala E:104

(no "SAP(SNP)/Variant" information available for 4GUM)

(no "PROSITE Motif" information available for 4GUM)

(no "Exon" information available for 4GUM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains d4guma_ A: Microphage migration inhibition factor (MIF)                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhhheeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.......ee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4gum A   1 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNCSTFA 114
                                    10        20        30        40        50        60        70        80        90       100       110

Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains d4gumb_ B: Microphage migration inhibition factor (MIF)                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeeee....hhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee......ee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4gum B   1 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNCSTFA 114
                                    10        20        30        40        50        60        70        80        90       100       110

Chain C from PDB  Type:PROTEIN  Length:112
                                                                                                                                                
               SCOP domains d4gumc_ C: Microphage migration inhibition factor (MIF)                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eee........eeeeeee...hhhhhhhhhhhhhhhhhhh..hhh.eeeeeee......eee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 4gum C   1 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNCSTFA 114
                                    10        20        30        40        50        60    ||  72        82        92       102       112  
                                                                                           65|                                              
                                                                                            68

Chain D from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains d4gumd_ D: Microphage migration inhibition factor (MIF)                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee...ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 4gum D   1 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNGWNCSTFA 114
                                    10        20        30        40        50        60        70        80        90       100 ||    114
                                                                                                                               102|       
                                                                                                                                107

Chain E from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains d4gume_ E: Microphage migration inhibition factor (MIF)                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhh..hhh.eeeeeee.......ee.hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 4gum E   1 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNCSTFA 114
                                    10        20        30        40        50        60     || 73        83        93       103       113 
                                                                                            66|                                            
                                                                                             70

Chain F from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains d4gumf_ F: Microphage migration inhibition factor (MIF)                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeee...hhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4gum F   1 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANNCSTF 113
                                    10        20        30        40        50        60    ||  72        82        92       102  ||    
                                                                                           65|                                  105|    
                                                                                            68                                   109

Chain G from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains d4gumg_ G: Microphage migration inhibition factor (MIF)                                                        SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.........hhhhhhhhhhhhhh.....eeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhh..hhh.eeeeeee.......ee.hhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 4gum G   1 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNCSTFA 114
                                    10        20        30 ||     42        52        62  ||    74        84        94       104       114
                                                          32|                            65|                                              
                                                           35                             68

Chain H from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains d4gumh_ H: Microphage migration inhibition factor (MIF)                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh......eeeee...eeee.......eeeeeee...hhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 4gum H   1 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMCS 111
                                    10        20        30        40        50        60   ||   72        82        92       110 
                                                                                          64|                               101| 
                                                                                           67                                110

Chain I from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains d4gumi_ I: Microphage migration inhibition factor (MIF)                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eee........eeeeeee....hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeee.......ee.hhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4gum I   1 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNCSTF 113
                                    10        20        30        40        50        60        70        80        90       100       110

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Tautomerase/MIF (104)

Superfamily: Tautomerase/MIF (104)

Family: MIF-related (58)

Protein domain: Microphage migration inhibition factor (MIF) (55)

Rhesus monkey (Macaca mulatta) [TaxId: 9544] (1)

1a	d4guma_	A:
1b	d4gumb_	B:
1c	d4gumc_	C:
1d	d4gumd_	D:
1e	d4gume_	E:
1f	d4gumf_	F:
1g	d4gumg_	G:
1h	d4gumh_	H:
1i	d4gumi_	I:

(no "CATH Domain" information available for 4GUM)

(no "Pfam Domain" information available for 4GUM)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Ala C:104 - Asn C:105	[ RasMol ]
		Ala E:103 - Ala E:104	[ RasMol ]
		Ile D:64 - Gly D:65	[ RasMol ]

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