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(-) Description

Title :  CRYSTALLOGRAPHIC AND BIOLOGICAL CHARACTERIZATION OF N- AND C- TERMINUS MUTANTS OF HUMAN MIF
 
Authors :  C. Fan, E. Lolis
Date :  26 Aug 12  (Deposition) - 02 Oct 13  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B,C,D  (1x)
Biol. Unit 3:  E,F,H  (1x)
Biol. Unit 4:  G  (3x)
Keywords :  Alpha/Beta Mixture, Cytokine, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Fan, E. Lolis
Crystallographic And Biological Characterization Of N- And C- Terminus Mutants Of Human Mif
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MACROPHAGE MIGRATION INHIBITORY FACTOR
    Chains: A, B, C, D, E, F, G, H
    EC Number: 5.3.2.1, 5.3.3.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11B(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GLIF, MIF, MMIF
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Strain: HUMAN
    Synonym: MIF, GLYCOSYLATION-INHIBITING FACTOR, GIF, L-DOPACHROME ISOMERASE, L-DOPACHROME TAUTOMERASE, PHENYLPYRUVATE TAUTOMERASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (3x): A       
Biological Unit 2 (1x):  BCD    
Biological Unit 3 (1x):     EF H
Biological Unit 4 (3x):       G 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1CL10Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN B:105 , ASN B:108 , HOH D:215BINDING SITE FOR RESIDUE CL B 201
02AC2SOFTWAREHOH B:321 , ASN C:105 , ASN C:108BINDING SITE FOR RESIDUE CL C 201
03AC3SOFTWAREASN E:100 , MET F:5 , HOH F:352BINDING SITE FOR RESIDUE CL E 201
04AC4SOFTWAREGLY E:71 , GLY E:72 , ALA E:73 , GLN E:74BINDING SITE FOR RESIDUE CL E 202
05AC5SOFTWAREGLY F:71 , GLY F:72 , ALA F:73 , GLN F:74BINDING SITE FOR RESIDUE CL F 201
06AC6SOFTWAREGLY G:71 , GLY G:72 , GLN G:74BINDING SITE FOR RESIDUE CL G 201
07AC7SOFTWAREMET G:5 , ASN G:100BINDING SITE FOR RESIDUE CL G 202
08AC8SOFTWAREMET E:5 , ASN H:100BINDING SITE FOR RESIDUE CL H 201
09AC9SOFTWAREASN F:100 , MET H:5BINDING SITE FOR RESIDUE CL H 202
10BC1SOFTWAREGLY H:71 , GLY H:72 , ALA H:73 , GLN H:74BINDING SITE FOR RESIDUE CL H 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GRO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GRO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GRO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GRO)

(-) Exons   (0, 0)

(no "Exon" information available for 4GRO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains d4groa_ A: Microphage migration inhibition factor (MIF)                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee..............eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhhh.ee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4gro A   1 PAAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain B from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains d4grob_ B: Microphage migration inhibition factor (MIF)                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4gro B   1 PAAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain C from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains d4groc_ C: Microphage migration inhibition factor (MIF)                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4gro C   1 PAAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain D from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains d4grod_ D: Microphage migration inhibition factor (MIF)                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4gro D   1 PAAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain E from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains d4groe_ E: Microphage migration inhibition factor (MIF)                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhhh.ee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4gro E   1 PAAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain F from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains d4grof_ F: Microphage migration inhibition factor (MIF)                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee..............eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4gro F   1 PAAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain G from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains d4grog_ G: Microphage migration inhibition factor (MIF)                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee..............eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhhh.ee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4gro G   1 PAAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain H from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains d4groh_ H: Microphage migration inhibition factor (MIF)                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee..............eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhhh.ee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4gro H   1 PAAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 117
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GRO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GRO)

(-) Gene Ontology  (54, 54)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MIF_HUMAN | P14174: 1ca7 1cgq 1gcz 1gd0 1gif 1ljt 1mif 1p1g 2ooh 2oow 2ooz 3b9s 3ce4 3djh 3dji 3hof 3ijg 3ijj 3jsf 3jsg 3jtu 3l5p 3l5r 3l5s 3l5t 3l5u 3l5v 3smb 3smc 3u18 3wnr 3wns 3wnt 4etg 4eui 4evg 4f2k 4grn 4grp 4grq 4grr 4gru 4gum 4k9g 4osf 4oyq 4p01 4p0h 4pkk 4pkz 4plu 4trf 4tru 4wr8 4wrb 4xx7 4xx8 4z15 4z1t 4z1u 5b4o 5bs9 5bsc 5bsi 5bsj 5cg4 5eiz 5hvs 5hvt 5hvv 5j7p 5j7q

(-) Related Entries Specified in the PDB File

4grn 4grp 4grq 4grr 4gru