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(-) Description

Title :  CHARACTERIZATION OF N- AND C- TERMINUS MUTANTS OF HUMAN MIF
 
Authors :  C. Fan, E. Lolis
Date :  26 Aug 12  (Deposition) - 25 Sep 13  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Alpha/Beta Mixture, Cytokine, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Fan, E. Lolis
Characterization Of N- And C- Terminus Mutants Of Human Mif
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MACROPHAGE MIGRATION INHIBITORY FACTOR
    Chains: A, B, C
    EC Number: 5.3.2.1, 5.3.3.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11B(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GLIF, MIF, MMIF
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Strain: HUMAN
    Synonym: MIF, GLYCOSYLATION-INHIBITING FACTOR, GIF, L-DOPACHROME ISOMERASE, L-DOPACHROME TAUTOMERASE, PHENYLPYRUVATE TAUTOMERASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric/Biological Unit (3, 17)
No.NameCountTypeFull Name
1AVR1Ligand/Ion(2R)-2-AMINO-1-[2-(1-METHYLETHYL)PYRAZOLO[1,5-A]PYRIDIN-3-YL]PROPAN-1-ONE
2CL11Ligand/IonCHLORIDE ION
3SO45Ligand/IonSULFATE ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:17 , ASP A:18 , HOH A:390 , HOH A:398 , HOH A:432 , HOH B:304 , ARG C:75BINDING SITE FOR RESIDUE SO4 A 201
02AC2SOFTWAREGLN A:47 , HOH A:462 , GLN B:47 , GLN C:47 , HOH C:372BINDING SITE FOR RESIDUE SO4 A 202
03AC3SOFTWAREGLY A:70 , GLY A:71 , ALA A:72 , GLN A:73 , HOH A:414 , HOH A:444BINDING SITE FOR RESIDUE SO4 A 203
04AC4SOFTWAREASN A:104 , ASN A:107 , HOH B:305BINDING SITE FOR RESIDUE CL A 204
05AC5SOFTWAREASN A:112 , PRO B:93BINDING SITE FOR RESIDUE CL A 205
06AC6SOFTWARELYS A:34 , LYS A:68BINDING SITE FOR RESIDUE CL A 206
07AC7SOFTWAREGLY A:19 , PHE A:20 , LEU A:21 , HOH A:302BINDING SITE FOR RESIDUE CL A 207
08AC8SOFTWAREGLU A:87 , ARG A:88 , GLN B:37 , TYR B:38 , TRP B:110 , PHE B:115 , HOH B:424 , TYR C:97BINDING SITE FOR RESIDUE AVR B 201
09AC9SOFTWAREGLY B:70 , GLY B:71 , ALA B:72 , GLN B:73BINDING SITE FOR RESIDUE CL B 202
10BC1SOFTWARESER B:22 , GLN B:26 , GLY C:53 , HOH C:453BINDING SITE FOR RESIDUE CL B 203
11BC2SOFTWAREASN B:104 , ASN B:107 , HOH C:322BINDING SITE FOR RESIDUE CL B 204
12BC3SOFTWAREPRO B:35 , PRO B:36 , GLN B:37BINDING SITE FOR RESIDUE CL B 205
13BC4SOFTWAREGLY C:70 , GLY C:71 , ALA C:72 , GLN C:73 , HOH C:417 , HOH C:433BINDING SITE FOR RESIDUE SO4 C 201
14BC5SOFTWAREALA A:105 , PHE A:115 , ALA A:116 , ASN C:111 , ASN C:112 , HOH C:307 , HOH C:348 , HOH C:399 , HOH C:447BINDING SITE FOR RESIDUE SO4 C 202
15BC6SOFTWAREASN C:104 , ASN C:107 , HOH C:424BINDING SITE FOR RESIDUE CL C 203
16BC7SOFTWAREASN A:111 , PRO C:1 , HOH C:363BINDING SITE FOR RESIDUE CL C 204
17BC8SOFTWARESER C:55BINDING SITE FOR RESIDUE CL C 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GRR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GRR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GRR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GRR)

(-) Exons   (0, 0)

(no "Exon" information available for 4GRR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains d4grra_ A: Microphage migration inhibition factor (MIF)                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 4grr A   1 PAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain B from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains d4grrb_ B: Microphage migration inhibition factor (MIF)                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 4grr B   1 PAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain C from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains d4grrc_ C: Microphage migration inhibition factor (MIF)                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhh..hhhhhhhhhhhhhhh.hhh.eeeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 4grr C   1 PAAMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 116
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GRR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GRR)

(-) Gene Ontology  (54, 54)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MIF_HUMAN | P14174: 1ca7 1cgq 1gcz 1gd0 1gif 1ljt 1mif 1p1g 2ooh 2oow 2ooz 3b9s 3ce4 3djh 3dji 3hof 3ijg 3ijj 3jsf 3jsg 3jtu 3l5p 3l5r 3l5s 3l5t 3l5u 3l5v 3smb 3smc 3u18 3wnr 3wns 3wnt 4etg 4eui 4evg 4f2k 4grn 4gro 4grp 4grq 4gru 4gum 4k9g 4osf 4oyq 4p01 4p0h 4pkk 4pkz 4plu 4trf 4tru 4wr8 4wrb 4xx7 4xx8 4z15 4z1t 4z1u 5b4o 5bs9 5bsc 5bsi 5bsj 5cg4 5eiz 5hvs 5hvt 5hvv 5j7p 5j7q

(-) Related Entries Specified in the PDB File

4grn 4gro 4grp 4grq 4gru