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4GP3
Biol. Unit 4
Info
Asym.Unit (329 KB)
Biol.Unit 1 (163 KB)
Biol.Unit 2 (164 KB)
Biol.Unit 3 (322 KB)
Biol.Unit 4 (323 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HUMAN FASCIN 1 K358A MUTANT
Authors
:
S. Y. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Date
:
20 Aug 12 (Deposition) - 28 Nov 12 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: B (2x)
Keywords
:
Beta-Trefoil, Actin Bundling Protein, Cancer, Metastasis, Cell Migration, Actin-Binding, Phosphoprotein, Protein Binding, Actin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Diaz-Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Molecular Mechanism Of Fascin Function In Filopodial Formation.
J. Biol. Chem. V. 288 274 2013
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
2p: CHLORIDE ION (CLp)
2q: CHLORIDE ION (CLq)
2r: CHLORIDE ION (CLr)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
-1
Ligand/Ion
BROMIDE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
8
Ligand/Ion
GLYCEROL
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Sites
(22, 22)
Info
All Sites
01: AC4 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC1 (SOFTWARE)
19: DC2 (SOFTWARE)
20: DC3 (SOFTWARE)
21: DC4 (SOFTWARE)
22: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
THR A:484 , VAL A:485 , ARG B:398
BINDING SITE FOR RESIDUE CL A 504
02
BC3
SOFTWARE
ARG B:167 , ASP B:168
BINDING SITE FOR RESIDUE BR B 501
03
BC4
SOFTWARE
ARG B:82 , GLY B:86 , ASP B:88
BINDING SITE FOR RESIDUE BR B 502
04
BC5
SOFTWARE
TYR B:230 , GLY B:243 , LYS B:244
BINDING SITE FOR RESIDUE BR B 503
05
BC6
SOFTWARE
PRO B:87 , ARG B:90
BINDING SITE FOR RESIDUE BR B 504
06
BC7
SOFTWARE
THR A:434 , VAL A:435 , VAL A:449 , ARG B:110 , GLN B:124
BINDING SITE FOR RESIDUE CL B 505
07
BC8
SOFTWARE
GLN B:182 , ARG B:185
BINDING SITE FOR RESIDUE CL B 506
08
BC9
SOFTWARE
ARG B:82 , GLU B:83
BINDING SITE FOR RESIDUE CL B 507
09
CC1
SOFTWARE
ARG B:217 , SER B:218 , LYS B:250
BINDING SITE FOR RESIDUE CL B 508
10
CC2
SOFTWARE
ASP B:420
BINDING SITE FOR RESIDUE CL B 509
11
CC3
SOFTWARE
ARG B:398 , LYS B:399
BINDING SITE FOR RESIDUE CL B 510
12
CC4
SOFTWARE
ARG B:408 , SER B:409 , HOH B:606
BINDING SITE FOR RESIDUE CL B 511
13
CC5
SOFTWARE
GLN B:104 , ARG B:109
BINDING SITE FOR RESIDUE CL B 512
14
CC6
SOFTWARE
ARG B:185
BINDING SITE FOR RESIDUE CL B 513
15
CC7
SOFTWARE
ASP B:446
BINDING SITE FOR RESIDUE CL B 514
16
CC8
SOFTWARE
THR A:115 , ARG A:118 , PHE B:29 , ARG B:468
BINDING SITE FOR RESIDUE CL B 515
17
CC9
SOFTWARE
ASP B:450
BINDING SITE FOR RESIDUE CL B 516
18
DC1
SOFTWARE
PHE B:418
BINDING SITE FOR RESIDUE CL B 517
19
DC2
SOFTWARE
LYS B:379 , LEU B:380 , ILE B:381 , ASN B:382 , ARG B:383 , PRO B:384 , LEU B:416 , PHE B:418
BINDING SITE FOR RESIDUE GOL B 518
20
DC3
SOFTWARE
LYS B:32 , VAL B:33 , ASP B:117 , LEU B:119 , HOH B:690 , HOH B:703
BINDING SITE FOR RESIDUE GOL B 519
21
DC4
SOFTWARE
SER B:133 , VAL B:134 , GLN B:184 , HOH B:728 , HOH B:760
BINDING SITE FOR RESIDUE GOL B 520
22
DC5
SOFTWARE
ILE B:345 , MET B:378 , GLY B:421 , TYR B:423 , PHE B:452 , PHE B:453
BINDING SITE FOR RESIDUE GOL B 521
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d4gp3a1 (A:7-140)
1b: SCOP_d4gp3a2 (A:141-259)
1c: SCOP_d4gp3a3 (A:260-382)
1d: SCOP_d4gp3a4 (A:383-493)
1e: SCOP_d4gp3b1 (B:8-140)
1f: SCOP_d4gp3b2 (B:141-259)
1g: SCOP_d4gp3b3 (B:260-382)
1h: SCOP_d4gp3b4 (B:383-493)
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Classes
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Folds
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Actin-crosslinking proteins
(8)
Family
:
Fascin
(6)
Protein domain
:
Fascin
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d4gp3a1
A:7-140
1b
d4gp3a2
A:141-259
1c
d4gp3a3
A:260-382
1d
d4gp3a4
A:383-493
1e
d4gp3b1
B:8-140
1f
d4gp3b2
B:141-259
1g
d4gp3b3
B:260-382
1h
d4gp3b4
B:383-493
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
Asymmetric Unit 2
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Miscellaneous
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (329 KB)
Header - Asym.Unit
Biol.Unit 1 (163 KB)
Header - Biol.Unit 1
Biol.Unit 2 (164 KB)
Header - Biol.Unit 2
Biol.Unit 3 (322 KB)
Header - Biol.Unit 3
Biol.Unit 4 (323 KB)
Header - Biol.Unit 4
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