PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4GP0
Biol. Unit 1
Info
Asym.Unit (325 KB)
Biol.Unit 1 (160 KB)
Biol.Unit 2 (163 KB)
Biol.Unit 3 (629 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE CRYSTAL STRUCTURE OF HUMAN FASCIN 1 R149A K150A R151A MUTANT
Authors
:
S. Y. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Date
:
20 Aug 12 (Deposition) - 28 Nov 12 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Beta-Trefoil, Actin Bundling Protein, Cancer, Metastasis, Cell Migration, Actin-Binding, Phosphoprotein, Protein Binding, Actin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Yang, F. K. Huang, J. Huang, S. Chen, J. Jakoncic, A. Leo-Macias, R. Diaz-Avalos, L. Chen, J. J. Zhang, X. Y. Huang
Molecular Mechanism Of Fascin Function In Filopodial Formation.
J. Biol. Chem. V. 288 274 2013
[
close entry info
]
Hetero Components
(2, 5)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
2a: CHLORIDE ION (CLa)
2aa: CHLORIDE ION (CLaa)
2ab: CHLORIDE ION (CLab)
2ac: CHLORIDE ION (CLac)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
2p: CHLORIDE ION (CLp)
2q: CHLORIDE ION (CLq)
2r: CHLORIDE ION (CLr)
2s: CHLORIDE ION (CLs)
2t: CHLORIDE ION (CLt)
2u: CHLORIDE ION (CLu)
2v: CHLORIDE ION (CLv)
2w: CHLORIDE ION (CLw)
2x: CHLORIDE ION (CLx)
2y: CHLORIDE ION (CLy)
2z: CHLORIDE ION (CLz)
3a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
3b: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTb)
3c: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTc)
4a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
5i: GLYCEROL (GOLi)
5j: GLYCEROL (GOLj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
-1
Ligand/Ion
BROMIDE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
DTT
1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
4
EPE
-1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5
GOL
4
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: CC3 (SOFTWARE)
19: CC6 (SOFTWARE)
20: CC8 (SOFTWARE)
21: DC2 (SOFTWARE)
22: FC1 (SOFTWARE)
23: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:86 , PRO A:87 , ASP A:88
BINDING SITE FOR RESIDUE BR A 501
02
AC2
SOFTWARE
THR A:484 , VAL A:485 , ARG B:398
BINDING SITE FOR RESIDUE CL A 502
03
AC3
SOFTWARE
CYS A:456 , ASP A:457 , VAL B:400 , THR B:401
BINDING SITE FOR RESIDUE CL A 503
04
AC4
SOFTWARE
GLU A:417 , PHE A:418 , GOL A:514
BINDING SITE FOR RESIDUE CL A 504
05
AC5
SOFTWARE
SER A:329 , LYS A:330
BINDING SITE FOR RESIDUE CL A 505
06
AC6
SOFTWARE
GLN A:182 , ASP A:183 , ARG A:185
BINDING SITE FOR RESIDUE CL A 506
07
AC7
SOFTWARE
PHE A:418 , ASP A:420
BINDING SITE FOR RESIDUE CL A 507
08
AC8
SOFTWARE
HOH A:608 , GLN B:124 , THR B:125
BINDING SITE FOR RESIDUE CL A 508
09
AC9
SOFTWARE
ASP A:446
BINDING SITE FOR RESIDUE CL A 509
10
BC1
SOFTWARE
HIS A:198 , ARG A:229
BINDING SITE FOR RESIDUE CL A 510
11
BC2
SOFTWARE
LYS A:131 , ARG B:68
BINDING SITE FOR RESIDUE CL A 511
12
BC3
SOFTWARE
LYS A:43 , GLN A:44
BINDING SITE FOR RESIDUE CL A 512
13
BC4
SOFTWARE
ASP A:342 , ARG A:343 , ARG A:344 , ILE A:345 , GLY A:421 , TYR A:423 , PHE A:452 , PHE A:453
BINDING SITE FOR RESIDUE GOL A 513
14
BC5
SOFTWARE
LEU A:380 , ILE A:381 , ASN A:382 , ARG A:383 , PRO A:384 , LEU A:416 , PHE A:418 , CL A:504
BINDING SITE FOR RESIDUE GOL A 514
15
BC6
SOFTWARE
CYS A:260 , ALA A:261 , LEU A:296 , ILE A:298 , CYS A:456 , ASN A:459 , LYS A:460 , TYR A:493
BINDING SITE FOR RESIDUE GOL A 515
16
BC7
SOFTWARE
ALA A:149 , VAL A:165 , ASP A:166 , PRO A:236
BINDING SITE FOR RESIDUE GOL A 516
17
BC8
SOFTWARE
ARG A:341 , ASP A:342 , ARG A:343 , ARG A:344 , LEU A:375 , HOH B:693 , HOH B:694
BINDING SITE FOR RESIDUE DTT A 517
18
CC3
SOFTWARE
ARG A:167 , ASP A:168 , ARG B:201
BINDING SITE FOR RESIDUE BR B 504
19
CC6
SOFTWARE
THR A:434 , VAL A:435 , VAL A:449 , ARG B:110 , GLN B:124
BINDING SITE FOR RESIDUE CL B 507
20
CC8
SOFTWARE
THR A:320 , PHE B:418 , ASP B:420
BINDING SITE FOR RESIDUE CL B 509
21
DC2
SOFTWARE
ARG A:205
BINDING SITE FOR RESIDUE CL B 512
22
FC1
SOFTWARE
THR A:326 , HIS B:193 , PRO B:384 , GLN B:415 , LEU B:416 , GLU B:417 , GOL B:528
BINDING SITE FOR RESIDUE GOL B 529
23
FC5
SOFTWARE
GLU A:207 , ASP B:166 , THR B:289 , ASP B:290
BINDING SITE FOR RESIDUE EPE B 533
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d4gp0a1 (A:7-140)
1b: SCOP_d4gp0a2 (A:141-259)
1c: SCOP_d4gp0a3 (A:260-382)
1d: SCOP_d4gp0a4 (A:383-493)
1e: SCOP_d4gp0b1 (B:8-140)
1f: SCOP_d4gp0b2 (B:141-259)
1g: SCOP_d4gp0b3 (B:260-382)
1h: SCOP_d4gp0b4 (B:383-493)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Actin-crosslinking proteins
(8)
Family
:
Fascin
(6)
Protein domain
:
Fascin
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d4gp0a1
A:7-140
1b
d4gp0a2
A:141-259
1c
d4gp0a3
A:260-382
1d
d4gp0a4
A:383-493
1e
d4gp0b1
B:8-140
1f
d4gp0b2
B:141-259
1g
d4gp0b3
B:260-382
1h
d4gp0b4
B:383-493
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (325 KB)
Header - Asym.Unit
Biol.Unit 1 (160 KB)
Header - Biol.Unit 1
Biol.Unit 2 (163 KB)
Header - Biol.Unit 2
Biol.Unit 3 (629 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4GP0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
