4GM5 - JenaLib

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Title :   CARBOXYPEPTIDASE T WITH SULPHAMOIL ARGININE

Authors :   S. A. Kuznetsov, V. I. Timofeev, V. K. Akparov, I. P. Kuranova

Date :   15 Aug 12 (Deposition) - 21 Aug 13 (Release) - 21 Aug 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.39

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Zinc Carboxypeptidase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. A. Kuznetsov, V. I. Timofeev, V. K. Akparov, I. P. Kuranova
Carboxypeptidase T With Sulphamoil Arginine
To Be Published
PubMed: search

Molecule 1 - CARBOXYPEPTIDASE T
	Chains	:	A
	EC Number	:	3.4.17.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 99-421
	Gene	:	CPT
	Organism Scientific	:	THERMOACTINOMYCES VULGARIS
	Organism Taxid	:	2026

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 27)

No.	Name	Count	Type	Full Name
1	0X9	1	Ligand/Ion	N~2~-SULFAMOYL-L-ARGININE
2	CA	4	Ligand/Ion	CALCIUM ION
3	GOL	12	Ligand/Ion	GLYCEROL
4	SO4	9	Ligand/Ion	SULFATE ION
5	ZN	1	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 22)

No.	Name	Count	Type	Full Name
1	0X9	1	Ligand/Ion	N~2~-SULFAMOYL-L-ARGININE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	GOL	12	Ligand/Ion	GLYCEROL
4	SO4	9	Ligand/Ion	SULFATE ION
5	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 44)

No.	Name	Count	Type	Full Name
1	0X9	2	Ligand/Ion	N~2~-SULFAMOYL-L-ARGININE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	GOL	24	Ligand/Ion	GLYCEROL
4	SO4	18	Ligand/Ion	SULFATE ION
5	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (27, 27)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:69 , GLU A:72 , HIS A:204 , 0X9 A:408	BINDING SITE FOR RESIDUE ZN A 401
02	AC2	SOFTWARE	SER A:7 , TYR A:9 , GLU A:14 , HOH A:578 , HOH A:656 , HOH A:748	BINDING SITE FOR RESIDUE CA A 402
03	AC3	SOFTWARE	SER A:50 , ASP A:51 , GLU A:57 , GLU A:59 , HOH A:585	BINDING SITE FOR RESIDUE CA A 403
04	AC4	SOFTWARE	TYR A:5 , ASP A:291 , GLU A:292 , HOH A:628 , HOH A:763 , HOH A:764	BINDING SITE FOR RESIDUE CA A 404
05	AC5	SOFTWARE	ASP A:56 , GLU A:57 , GLU A:61 , GLU A:104 , HOH A:612 , HOH A:747	BINDING SITE FOR RESIDUE CA A 405
06	AC6	SOFTWARE	PHE A:174 , ARG A:183 , ASN A:187 , TRP A:264 , GLN A:268 , HOH A:646 , HOH A:681 , HOH A:847	BINDING SITE FOR RESIDUE SO4 A 406
07	AC7	SOFTWARE	VAL A:16 , ASN A:20 , ASN A:25 , LYS A:32 , TRP A:45 , HOH A:530	BINDING SITE FOR RESIDUE SO4 A 407
08	AC8	SOFTWARE	HIS A:69 , GLU A:72 , ARG A:129 , ASN A:146 , ARG A:147 , HIS A:204 , THR A:205 , GLY A:215 , ALA A:251 , TYR A:255 , THR A:257 , ASP A:260 , THR A:262 , ASP A:263 , THR A:275 , GLU A:277 , ZN A:401 , GOL A:410 , SO4 A:416 , HOH A:731	BINDING SITE FOR RESIDUE 0X9 A 408
09	AC9	SOFTWARE	SER A:139 , TYR A:140 , GOL A:423 , HOH A:779 , HOH A:895	BINDING SITE FOR RESIDUE GOL A 409
10	BC1	SOFTWARE	TYR A:206 , SER A:207 , 0X9 A:408 , SO4 A:416	BINDING SITE FOR RESIDUE GOL A 410
11	BC2	SOFTWARE	ASP A:1 , ASN A:11 , GLU A:117 , ILE A:120 , HOH A:554 , HOH A:659 , HOH A:785	BINDING SITE FOR RESIDUE GOL A 411
12	BC3	SOFTWARE	GLY A:193 , LYS A:194 , GLN A:195 , GLN A:268 , HIS A:269 , HOH A:632 , HOH A:704 , HOH A:881	BINDING SITE FOR RESIDUE GOL A 412
13	BC4	SOFTWARE	PRO A:3 , SER A:4 , TYR A:5 , HOH A:698 , HOH A:761	BINDING SITE FOR RESIDUE GOL A 413
14	BC5	SOFTWARE	TYR A:125 , SER A:127 , SER A:223 , HOH A:603 , HOH A:635 , HOH A:641 , HOH A:652	BINDING SITE FOR RESIDUE GOL A 414
15	BC6	SOFTWARE	TYR A:39 , GLN A:133 , PRO A:134 , ARG A:171 , HOH A:705 , HOH A:755 , HOH A:903	BINDING SITE FOR RESIDUE GOL A 415
16	BC7	SOFTWARE	ARG A:129 , ARG A:147 , GLU A:166 , THR A:167 , TYR A:255 , 0X9 A:408 , GOL A:410 , HOH A:731	BINDING SITE FOR RESIDUE SO4 A 416
17	BC8	SOFTWARE	THR A:239 , LYS A:311 , HOH A:617 , HOH A:836 , HOH A:896	BINDING SITE FOR RESIDUE SO4 A 417
18	BC9	SOFTWARE	GLU A:14 , ASN A:17 , HOH A:624 , HOH A:719 , HOH A:759 , HOH A:873	BINDING SITE FOR RESIDUE SO4 A 418
19	CC1	SOFTWARE	PHE A:33 , ASP A:184 , PHE A:185 , HOH A:887 , HOH A:898	BINDING SITE FOR RESIDUE GOL A 419
20	CC2	SOFTWARE	GLU A:40 , GLY A:41 , ARG A:42 , HOH A:615 , HOH A:672	BINDING SITE FOR RESIDUE GOL A 420
21	CC3	SOFTWARE	SER A:138 , SER A:139 , TYR A:140 , SER A:172 , HOH A:581 , HOH A:904 , HOH A:905 , HOH A:906	BINDING SITE FOR RESIDUE GOL A 421
22	CC4	SOFTWARE	THR A:226 , GLN A:227 , HOH A:557 , HOH A:571 , HOH A:863 , HOH A:888	BINDING SITE FOR RESIDUE SO4 A 422
23	CC5	SOFTWARE	TRP A:128 , SER A:139 , TYR A:140 , VAL A:141 , GOL A:409 , HOH A:527 , HOH A:642 , HOH A:690 , HOH A:706 , HOH A:779 , HOH A:895	BINDING SITE FOR RESIDUE GOL A 423
24	CC6	SOFTWARE	LYS A:48 , TYR A:106 , HOH A:898 , HOH A:899	BINDING SITE FOR RESIDUE SO4 A 424
25	CC7	SOFTWARE	ASN A:28 , LYS A:31 , HOH A:725	BINDING SITE FOR RESIDUE SO4 A 425
26	CC8	SOFTWARE	ASN A:52 , VAL A:53 , GLY A:54 , THR A:55 , HOH A:674	BINDING SITE FOR RESIDUE SO4 A 426
27	CC9	SOFTWARE	ARG A:71 , GLU A:166 , TYR A:216 , THR A:217 , THR A:219 , HOH A:541 , HOH A:550 , HOH A:884 , HOH A:907 , HOH A:908	BINDING SITE FOR RESIDUE GOL A 427

Asymmetric Unit

No.	Residues
1	A:155	-	A:156
2	A:314	-	A:323

Asymmetric Unit

No.	Residues
1	Thr A:205	-	Tyr A:206
2	Pro A:213	-	Tyr A:214
3	Tyr A:279	-	Pro A:280
4	Asn A:284	-	Pro A:285

(no "SAP(SNP)/Variant" information available for 4GM5)

(no "PROSITE Motif" information available for 4GM5)

(no "Exon" information available for 4GM5)

Asymmetric Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4gm5a_ A: Carboxypeptidase T                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee...........eeeeee......hhhhhhhhhhhhhhhhh...hhhhhhhhh..eeeee...hhhhhhhhhh......................hhhhh...........................hhhhhhhhhhhhhhee..ee.eeeeeeee....eeee.............hhhhhhhhhhhhhhhhhhhh.eeeehhhhh....hhhhhhhhhhh.eeeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gm5 A   1 DFPSYDSGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPETAAMRDFINSRVVGGKQQIKTLITFHTYSELILYPYGYTYTDVPSDMTQDDFNVFKTMANTMAQTNGYTPQQASDLYITDGDMTDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADCPYSVIGKSC 323
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320

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	-	→ Gap	(green background, '-', border residues have a numbering label)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

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Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Phosphorylase/hydrolase-like (558)

Superfamily: Zn-dependent exopeptidases (214)

Family: Carboxypeptidase T (12)

Protein domain: Carboxypeptidase T (12)

Thermoactinomyces vulgaris [TaxId: 2026] (12)

d4gm5a_

(no "CATH Domain" information available for 4GM5)

(no "Pfam Domain" information available for 4GM5)

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Asymmetric Unit
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	Cis Peptide Bonds
		Asn A:284 - Pro A:285	[ RasMol ]
		Pro A:213 - Tyr A:214	[ RasMol ]
		Thr A:205 - Tyr A:206	[ RasMol ]
		Tyr A:279 - Pro A:280	[ RasMol ]

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	CBPT_THEVU \| P29068	:	1obr 3prt 3qnv 3v38 3v7z 4djl 4duk 4f8z 4iav 4ihm 4ik2

(no "Related Entries Specified in the PDB File" available for 4GM5)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 27)

Sites (27, 27)

SS Bonds (2, 2)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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