3V38 - JenaLib

Asymmetric Unit (29, 29)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:69 , GLU A:72 , HIS A:204 , HOH A:544	BINDING SITE FOR RESIDUE ZN A 401
02	AC2	SOFTWARE	HIS A:69 , ARG A:129 , ASN A:146 , ARG A:147 , TYR A:255 , GLU A:277 , GOL A:404 , GOL A:408 , HOH A:544	BINDING SITE FOR RESIDUE SO4 A 402
03	AC3	SOFTWARE	TYR A:212 , ASP A:220 , PHE A:230 , LYS A:234 , HOH A:560 , HOH A:648	BINDING SITE FOR RESIDUE SO4 A 403
04	AC4	SOFTWARE	ASN A:146 , LEU A:211 , ALA A:251 , TYR A:255 , THR A:257 , ASP A:260 , THR A:275 , GLU A:277 , SO4 A:402 , HOH A:580 , HOH A:616 , HOH A:633	BINDING SITE FOR RESIDUE GOL A 404
05	AC5	SOFTWARE	GLY A:193 , GLN A:195 , HIS A:269 , HOH A:685 , HOH A:756	BINDING SITE FOR RESIDUE GOL A 405
06	AC6	SOFTWARE	ARG A:71 , LYS A:152 , GLU A:166 , TYR A:216 , GOL A:409 , GOL A:425	BINDING SITE FOR RESIDUE GOL A 406
07	AC7	SOFTWARE	GLY A:137 , SER A:138 , SER A:139 , TYR A:140 , ARG A:171 , SER A:172 , HOH A:615	BINDING SITE FOR RESIDUE GOL A 407
08	AC8	SOFTWARE	ARG A:129 , THR A:205 , TYR A:206 , TYR A:255 , GLU A:277 , PHE A:287 , SO4 A:402 , HOH A:507 , HOH A:796 , HOH A:797	BINDING SITE FOR RESIDUE GOL A 408
09	AC9	SOFTWARE	ARG A:71 , GLU A:166 , GOL A:406 , HOH A:551 , HOH A:604 , HOH A:801	BINDING SITE FOR RESIDUE GOL A 409
10	BC1	SOFTWARE	PHE A:174 , ARG A:183 , ASN A:187 , TRP A:264 , GLN A:268 , HOH A:640 , HOH A:787	BINDING SITE FOR RESIDUE SO4 A 410
11	BC2	SOFTWARE	PRO A:3 , SER A:4 , TYR A:5 , HOH A:708	BINDING SITE FOR RESIDUE GOL A 411
12	BC3	SOFTWARE	LYS A:48 , GLY A:54 , THR A:55 , ASP A:56 , ARG A:189 , GOL A:413 , HOH A:653	BINDING SITE FOR RESIDUE GOL A 412
13	BC4	SOFTWARE	LYS A:31 , PHE A:33 , TYR A:106 , GOL A:412 , HOH A:554	BINDING SITE FOR RESIDUE GOL A 413
14	BC5	SOFTWARE	ASN A:98 , ASN A:102 , ARG A:103	BINDING SITE FOR RESIDUE GOL A 414
15	BC6	SOFTWARE	VAL A:16 , ASN A:20 , THR A:21 , ASN A:25 , LYS A:32 , TRP A:45 , HOH A:502	BINDING SITE FOR RESIDUE GOL A 415
16	BC7	SOFTWARE	TYR A:39 , GLU A:40 , HOH A:625 , HOH A:692 , HOH A:715	BINDING SITE FOR RESIDUE GOL A 416
17	BC8	SOFTWARE	ASN A:28 , LYS A:31 , LYS A:32 , PHE A:33 , HOH A:773	BINDING SITE FOR RESIDUE GOL A 417
18	BC9	SOFTWARE	ASN A:11 , ASN A:13 , GLU A:14 , GOL A:419 , HOH A:569	BINDING SITE FOR RESIDUE GOL A 418
19	CC1	SOFTWARE	GLU A:14 , ASN A:17 , GOL A:418	BINDING SITE FOR RESIDUE GOL A 419
20	CC2	SOFTWARE	ARG A:95 , GLU A:303	BINDING SITE FOR RESIDUE GOL A 420
21	CC3	SOFTWARE	THR A:239 , TYR A:307 , GLU A:310 , LYS A:311 , VAL A:318 , HOH A:704 , HOH A:799	BINDING SITE FOR RESIDUE GOL A 421
22	CC4	SOFTWARE	ASP A:93 , ARG A:95 , LYS A:302	BINDING SITE FOR RESIDUE GOL A 422
23	CC5	SOFTWARE	ARG A:132 , HOH A:528 , HOH A:619 , HOH A:783	BINDING SITE FOR RESIDUE GOL A 423
24	CC6	SOFTWARE	TYR A:12 , ARG A:42 , GLU A:117 , HOH A:663 , HOH A:776	BINDING SITE FOR RESIDUE GOL A 424
25	CC7	SOFTWARE	SER A:127 , LYS A:152 , TYR A:216 , PRO A:222 , SER A:223 , ASP A:224 , GOL A:406 , HOH A:545 , HOH A:768	BINDING SITE FOR RESIDUE GOL A 425
26	CC8	SOFTWARE	SER A:223 , HOH A:588 , HOH A:687 , HOH A:724 , HOH A:759 , HOH A:769 , HOH A:790	BINDING SITE FOR RESIDUE GOL A 426
27	CC9	SOFTWARE	GLN A:249 , ASN A:254	BINDING SITE FOR RESIDUE GOL A 427
28	DC1	SOFTWARE	TRP A:128 , TYR A:140 , VAL A:141 , HOH A:541 , HOH A:584	BINDING SITE FOR RESIDUE GOL A 428
29	DC2	SOFTWARE	TYR A:81 , GLY A:295 , SER A:299 , HOH A:791	BINDING SITE FOR RESIDUE GOL A 429

SS Bonds (2, 2)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:323
 aligned with CBPT_THEVU | P29068 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:323
                                   108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418   
           CBPT_THEVU    99 DFPSYDSGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPETAAMRDFINSRVVGGKQQIKTLITFHTYSELILYPYGYTYTDVPSDMTQDDFNVFKTMANTMAQTNGYTPQQASDLYITDGDMTDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADCPYSVIGKSC 421
               SCOP domains d3v38a_ A: Carboxypeptidase T                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee...........eeeeee......hhhhhhhhhhhhhhhhh...hhhhhhhhhhheeeee...hhhhhhhhhh......................hhhhh...........................hhhhhhhhhhhhhhee..ee.eeeeeeee....eeee.............hhhhhhhhhhhhhhhhhhhh.eeee.hhh.....hhhhhhhhhhh.eeeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------CARBOXYPEPT_ZN_1       -------------------------------------------------------------------------------------------------------------------------CARBOXYPEPT------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v38 A   1 DFPSYDSGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPETAAMRDFINSRVVGGKQQIKTLITFHTYSELILYPYGYTYTDVPSDMTQDDFNVFKTMANTMAQTNGYTPQQASDNYITDGDMTDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADCPYSVIGKSC 323
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric Unit(hide GO term definitions)

Chain A (CBPT_THEVU | P29068)

molecular function
	GO:0004180	carboxypeptidase activity	Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004181	metallocarboxypeptidase activity	Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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	Cis Peptide Bonds
		Asn A:284 - Pro A:285	[ RasMol ]
		Pro A:213 - Tyr A:214	[ RasMol ]
		Thr A:205 - Tyr A:206	[ RasMol ]
		Tyr A:279 - Pro A:280	[ RasMol ]

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	3v38
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	CBPT_THEVU \| P29068
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	3.4.17.18
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 29)

Sites (29, 29)