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(-) Description

Title :  CARBOXYPEPTIDASE T WITH BOC-LEU
 
Authors :  V. I. Timofeev, S. A. Kuznetsov, V. K. Akparov, I. P. Kuranova
Date :  18 May 12  (Deposition) - 22 May 13  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.38
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. I. Timofeev, S. A. Kuznetsov, V. K. H. Akparov, G. G. Chestukhina, I. P. Kuranova
Three-Dimensional Structure Of Carboxypeptidase T From Thermoactinomyces Vulgaris In Complex With N-Boc-L-Leucine.
Biochemistry Mosc. V. 78 252 2013
PubMed-ID: 23586718  |  Reference-DOI: 10.1134/S0006297913030061

(-) Compounds

Molecule 1 - CARBOXYPEPTIDASE T
    Chains: A
    EC Number: 3.4.17.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 99-421
    Gene: CPT
    Organism Scientific: THERMOACTINOMYCES VULGARIS
    Organism Taxid: 2026

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 31)

Asymmetric/Biological Unit (5, 31)
No.NameCountTypeFull Name
1BL21Ligand/IonN-(TERT-BUTOXYCARBONYL)-L-LEUCINE
2CA4Ligand/IonCALCIUM ION
3GOL22Ligand/IonGLYCEROL
4SO43Ligand/IonSULFATE ION
5ZN1Ligand/IonZINC ION

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:69 , GLU A:72 , HIS A:204 , BL2 A:402BINDING SITE FOR RESIDUE ZN A 401
02AC2SOFTWAREHIS A:69 , ARG A:71 , GLU A:72 , ARG A:129 , HIS A:204 , THR A:205 , TYR A:206 , SER A:207 , TYR A:255 , GLU A:277 , PHE A:287 , ZN A:401 , SO4 A:403 , HOH A:507BINDING SITE FOR RESIDUE BL2 A 402
03AC3SOFTWAREHIS A:69 , ARG A:129 , ASN A:146 , ARG A:147 , TYR A:255 , GLU A:277 , BL2 A:402 , GOL A:413BINDING SITE FOR RESIDUE SO4 A 403
04AC4SOFTWAREPHE A:174 , ARG A:183 , ASN A:187 , TRP A:264 , GLN A:268 , HOH A:622 , HOH A:643 , HOH A:809BINDING SITE FOR RESIDUE SO4 A 404
05AC5SOFTWAREVAL A:16 , ASN A:20 , ASN A:25 , LYS A:32 , TRP A:45 , HOH A:533 , HOH A:841BINDING SITE FOR RESIDUE SO4 A 405
06AC6SOFTWARESER A:50 , ASP A:51 , GLU A:57 , GLU A:59 , HOH A:506BINDING SITE FOR RESIDUE CA A 406
07AC7SOFTWAREASP A:56 , GLU A:57 , GLU A:61 , GLU A:104 , HOH A:646 , HOH A:800BINDING SITE FOR RESIDUE CA A 407
08AC8SOFTWAREASP A:51 , GLU A:57 , GLU A:59 , ASN A:101BINDING SITE FOR RESIDUE CA A 408
09AC9SOFTWARESER A:7 , TYR A:9 , GLU A:14 , HOH A:501 , HOH A:555 , HOH A:866BINDING SITE FOR RESIDUE CA A 409
10BC1SOFTWAREPRO A:3 , SER A:4 , TYR A:5 , HOH A:759 , HOH A:781BINDING SITE FOR RESIDUE GOL A 410
11BC2SOFTWAREHIS A:10 , LYS A:18 , HOH A:603 , HOH A:675BINDING SITE FOR RESIDUE GOL A 411
12BC3SOFTWAREHIS A:10 , LYS A:18 , GLU A:77 , LEU A:80 , TYR A:81 , ASP A:84 , ILE A:294 , HOH A:634 , HOH A:758BINDING SITE FOR RESIDUE GOL A 412
13BC4SOFTWAREASN A:146 , LEU A:211 , ALA A:251 , THR A:257 , ASP A:260 , SO4 A:403 , HOH A:737 , HOH A:810BINDING SITE FOR RESIDUE GOL A 413
14BC5SOFTWARETRP A:128 , TYR A:140 , VAL A:141 , GOL A:415 , HOH A:552 , HOH A:589 , HOH A:623 , HOH A:693 , HOH A:726BINDING SITE FOR RESIDUE GOL A 414
15BC6SOFTWARESER A:139 , TYR A:140 , GOL A:414BINDING SITE FOR RESIDUE GOL A 415
16BC7SOFTWAREPHE A:33 , ASP A:184 , PHE A:185 , GOL A:417 , HOH A:539 , HOH A:897BINDING SITE FOR RESIDUE GOL A 416
17BC8SOFTWARELYS A:48 , TYR A:106 , GOL A:416 , HOH A:556BINDING SITE FOR RESIDUE GOL A 417
18BC9SOFTWAREGLY A:193 , GLN A:195 , HIS A:269 , HOH A:694 , HOH A:805 , HOH A:831BINDING SITE FOR RESIDUE GOL A 418
19CC1SOFTWAREVAL A:221 , PRO A:222 , SER A:223 , TYR A:283 , ASN A:284 , PRO A:285 , GOL A:421 , HOH A:518 , HOH A:580 , HOH A:630 , HOH A:682BINDING SITE FOR RESIDUE GOL A 419
20CC2SOFTWARETHR A:226 , GLN A:227 , ASP A:228 , HOH A:820 , HOH A:833 , HOH A:890BINDING SITE FOR RESIDUE GOL A 420
21CC3SOFTWARESER A:223 , TYR A:288 , GOL A:419 , HOH A:585 , HOH A:587 , HOH A:630 , HOH A:801 , HOH A:862BINDING SITE FOR RESIDUE GOL A 421
22CC4SOFTWARESER A:138 , SER A:139 , TYR A:140 , ARG A:171 , SER A:172 , HOH A:547 , HOH A:620BINDING SITE FOR RESIDUE GOL A 422
23CC5SOFTWARETYR A:39 , GLN A:133 , PRO A:134 , ARG A:171 , GOL A:427 , HOH A:685 , HOH A:742 , HOH A:826BINDING SITE FOR RESIDUE GOL A 423
24CC6SOFTWAREARG A:296 , SER A:299 , HOH A:772 , HOH A:799BINDING SITE FOR RESIDUE GOL A 424
25CC7SOFTWAREASP A:1 , ASN A:11 , GLU A:117 , ILE A:120 , HOH A:548 , HOH A:701 , HOH A:881BINDING SITE FOR RESIDUE GOL A 425
26CC8SOFTWARESER A:207 , THR A:247 , THR A:281 , HOH A:669 , HOH A:806BINDING SITE FOR RESIDUE GOL A 426
27CC9SOFTWAREPHE A:174 , SER A:175 , PRO A:177 , ALA A:180 , GOL A:423 , HOH A:566 , HOH A:826 , HOH A:851BINDING SITE FOR RESIDUE GOL A 427
28DC1SOFTWARETHR A:239 , TYR A:307 , LYS A:311 , HOH A:787 , HOH A:843BINDING SITE FOR RESIDUE GOL A 428
29DC2SOFTWARETYR A:12 , ARG A:42 , GLU A:117 , GOL A:431BINDING SITE FOR RESIDUE GOL A 429
30DC3SOFTWARETYR A:81 , ASP A:84 , LEU A:85 , GLN A:88 , ASN A:89 , HOH A:818 , HOH A:840BINDING SITE FOR RESIDUE GOL A 430
31DC4SOFTWAREGLU A:40 , GLY A:41 , GOL A:429BINDING SITE FOR RESIDUE GOL A 431

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:155 -A:156
2A:314 -A:323

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Thr A:205 -Tyr A:206
2Pro A:213 -Tyr A:214
3Tyr A:279 -Pro A:280
4Asn A:284 -Pro A:285

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F8Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F8Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4F8Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4f8za_ A: Carboxypeptidase T                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee...........eeeeee......hhhhhhhhhhhhhhhhh...hhhhhhhhhhheeeee...hhhhhhhhhh......................hhhhh...........................hhhhhhhhhhhhhhee..ee.eeeeeeee....eeee.............hhhhhhhhhhhhhhhhhhhh.eeeehhhhh....hhhhhhhhhhh.eeeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f8z A   1 DFPSYDSGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISSGSYKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPETAAMRDFINSRVVGGKQQIKTLITFHTYSELILYPYGYTYTDVPSDMTQDDFNVFKTMANTMAQTNGYTPQQASDLYITDGDMTDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADCPYSVIGKSC 323
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F8Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F8Z)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  CBPT_THEVU | P29068
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  3.4.17.18
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 Related Entries

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        CBPT_THEVU | P29068: 1obr 3prt 3qnv 3v38 3v7z 4djl 4duk 4gm5 4iav 4ihm 4ik2

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