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4GM5
Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (280 KB)
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(1)
Title
:
CARBOXYPEPTIDASE T WITH SULPHAMOIL ARGININE
Authors
:
S. A. Kuznetsov, V. I. Timofeev, V. K. Akparov, I. P. Kuranova
Date
:
15 Aug 12 (Deposition) - 21 Aug 13 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.39
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Zinc Carboxypeptidase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. A. Kuznetsov, V. I. Timofeev, V. K. Akparov, I. P. Kuranova
Carboxypeptidase T With Sulphamoil Arginine
To Be Published
[
close entry info
]
Hetero Components
(5, 27)
Info
All Hetero Components
1a: N~2~-SULFAMOYL-L-ARGININE (0X9a)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0X9
1
Ligand/Ion
N~2~-SULFAMOYL-L-ARGININE
2
CA
4
Ligand/Ion
CALCIUM ION
3
GOL
12
Ligand/Ion
GLYCEROL
4
SO4
9
Ligand/Ion
SULFATE ION
5
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:69 , GLU A:72 , HIS A:204 , 0X9 A:408
BINDING SITE FOR RESIDUE ZN A 401
02
AC2
SOFTWARE
SER A:7 , TYR A:9 , GLU A:14 , HOH A:578 , HOH A:656 , HOH A:748
BINDING SITE FOR RESIDUE CA A 402
03
AC3
SOFTWARE
SER A:50 , ASP A:51 , GLU A:57 , GLU A:59 , HOH A:585
BINDING SITE FOR RESIDUE CA A 403
04
AC4
SOFTWARE
TYR A:5 , ASP A:291 , GLU A:292 , HOH A:628 , HOH A:763 , HOH A:764
BINDING SITE FOR RESIDUE CA A 404
05
AC5
SOFTWARE
ASP A:56 , GLU A:57 , GLU A:61 , GLU A:104 , HOH A:612 , HOH A:747
BINDING SITE FOR RESIDUE CA A 405
06
AC6
SOFTWARE
PHE A:174 , ARG A:183 , ASN A:187 , TRP A:264 , GLN A:268 , HOH A:646 , HOH A:681 , HOH A:847
BINDING SITE FOR RESIDUE SO4 A 406
07
AC7
SOFTWARE
VAL A:16 , ASN A:20 , ASN A:25 , LYS A:32 , TRP A:45 , HOH A:530
BINDING SITE FOR RESIDUE SO4 A 407
08
AC8
SOFTWARE
HIS A:69 , GLU A:72 , ARG A:129 , ASN A:146 , ARG A:147 , HIS A:204 , THR A:205 , GLY A:215 , ALA A:251 , TYR A:255 , THR A:257 , ASP A:260 , THR A:262 , ASP A:263 , THR A:275 , GLU A:277 , ZN A:401 , GOL A:410 , SO4 A:416 , HOH A:731
BINDING SITE FOR RESIDUE 0X9 A 408
09
AC9
SOFTWARE
SER A:139 , TYR A:140 , GOL A:423 , HOH A:779 , HOH A:895
BINDING SITE FOR RESIDUE GOL A 409
10
BC1
SOFTWARE
TYR A:206 , SER A:207 , 0X9 A:408 , SO4 A:416
BINDING SITE FOR RESIDUE GOL A 410
11
BC2
SOFTWARE
ASP A:1 , ASN A:11 , GLU A:117 , ILE A:120 , HOH A:554 , HOH A:659 , HOH A:785
BINDING SITE FOR RESIDUE GOL A 411
12
BC3
SOFTWARE
GLY A:193 , LYS A:194 , GLN A:195 , GLN A:268 , HIS A:269 , HOH A:632 , HOH A:704 , HOH A:881
BINDING SITE FOR RESIDUE GOL A 412
13
BC4
SOFTWARE
PRO A:3 , SER A:4 , TYR A:5 , HOH A:698 , HOH A:761
BINDING SITE FOR RESIDUE GOL A 413
14
BC5
SOFTWARE
TYR A:125 , SER A:127 , SER A:223 , HOH A:603 , HOH A:635 , HOH A:641 , HOH A:652
BINDING SITE FOR RESIDUE GOL A 414
15
BC6
SOFTWARE
TYR A:39 , GLN A:133 , PRO A:134 , ARG A:171 , HOH A:705 , HOH A:755 , HOH A:903
BINDING SITE FOR RESIDUE GOL A 415
16
BC7
SOFTWARE
ARG A:129 , ARG A:147 , GLU A:166 , THR A:167 , TYR A:255 , 0X9 A:408 , GOL A:410 , HOH A:731
BINDING SITE FOR RESIDUE SO4 A 416
17
BC8
SOFTWARE
THR A:239 , LYS A:311 , HOH A:617 , HOH A:836 , HOH A:896
BINDING SITE FOR RESIDUE SO4 A 417
18
BC9
SOFTWARE
GLU A:14 , ASN A:17 , HOH A:624 , HOH A:719 , HOH A:759 , HOH A:873
BINDING SITE FOR RESIDUE SO4 A 418
19
CC1
SOFTWARE
PHE A:33 , ASP A:184 , PHE A:185 , HOH A:887 , HOH A:898
BINDING SITE FOR RESIDUE GOL A 419
20
CC2
SOFTWARE
GLU A:40 , GLY A:41 , ARG A:42 , HOH A:615 , HOH A:672
BINDING SITE FOR RESIDUE GOL A 420
21
CC3
SOFTWARE
SER A:138 , SER A:139 , TYR A:140 , SER A:172 , HOH A:581 , HOH A:904 , HOH A:905 , HOH A:906
BINDING SITE FOR RESIDUE GOL A 421
22
CC4
SOFTWARE
THR A:226 , GLN A:227 , HOH A:557 , HOH A:571 , HOH A:863 , HOH A:888
BINDING SITE FOR RESIDUE SO4 A 422
23
CC5
SOFTWARE
TRP A:128 , SER A:139 , TYR A:140 , VAL A:141 , GOL A:409 , HOH A:527 , HOH A:642 , HOH A:690 , HOH A:706 , HOH A:779 , HOH A:895
BINDING SITE FOR RESIDUE GOL A 423
24
CC6
SOFTWARE
LYS A:48 , TYR A:106 , HOH A:898 , HOH A:899
BINDING SITE FOR RESIDUE SO4 A 424
25
CC7
SOFTWARE
ASN A:28 , LYS A:31 , HOH A:725
BINDING SITE FOR RESIDUE SO4 A 425
26
CC8
SOFTWARE
ASN A:52 , VAL A:53 , GLY A:54 , THR A:55 , HOH A:674
BINDING SITE FOR RESIDUE SO4 A 426
27
CC9
SOFTWARE
ARG A:71 , GLU A:166 , TYR A:216 , THR A:217 , THR A:219 , HOH A:541 , HOH A:550 , HOH A:884 , HOH A:907 , HOH A:908
BINDING SITE FOR RESIDUE GOL A 427
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4gm5a_ (A:)
View:
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Classes
(
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(
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Folds
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(
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Superfamilies
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(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Carboxypeptidase T
(12)
Protein domain
:
Carboxypeptidase T
(12)
Thermoactinomyces vulgaris [TaxId: 2026]
(12)
1a
d4gm5a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (148 KB)
Header - Asym.Unit
Biol.Unit 1 (142 KB)
Header - Biol.Unit 1
Biol.Unit 2 (280 KB)
Header - Biol.Unit 2
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