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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ANAPLASTIC LYMPHOMA KINASE IN COMPLEX WITH ACYLIMINOBENZIMIDAZOLE INHIBITOR 1
 
Authors :  D. A. Whittington, L. F. Epstein, H. Chen
Date :  20 Jun 12  (Deposition) - 11 Jul 12  (Release) - 15 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Receptor Tyrosine Kinase, Inhibitor, Crizotinib, Neuroblastoma, Cd246, Phosphotransferase, Npm-Alk, Eml4-Alk, In Situ Proteolysis, Transferase-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. T. Lewis, C. M. Bode, D. M. Choquette, M. Potashman, K. Romero, J. C. Stellwagen, Y. Teffera, E. Moore, D. A. Whittington, H. Chen, L. F. Epstein, R. Emkey, P. S. Andrews, V. L. Yu, D. C. Saffran, M. Xu, A. Drew, P. Merkel, S. Szilvassy, R. L. Brake
The Discovery And Optimization Of A Novel Class Of Potent, Selective, And Orally Bioavailable Anaplastic Lymphoma Kinase (Alk) Inhibitors With Potential Utility For The Treatment Of Cancer.
J. Med. Chem. V. 55 6523 2012
PubMed-ID: 22734674  |  Reference-DOI: 10.1021/JM3005866

(-) Compounds

Molecule 1 - ALK TYROSINE KINASE RECEPTOR
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: KINASE DOMAIN, UNP RESIDUES 1058-1410
    Gene: ALK
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ANAPLASTIC LYMPHOMA KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
10US1Ligand/IonN-{1-[CIS-4-(HYDROXYMETHYL)CYCLOHEXYL]-5-(PIPERIDIN-1-YLMETHYL)-1H-BENZIMIDAZOL-2-YL}-3-(PROP-2-EN-1-YLSULFAMOYL)BENZAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:1122 , HIS A:1124 , GLY A:1125 , VAL A:1130 , ALA A:1148 , LEU A:1196 , GLU A:1197 , MET A:1199 , ALA A:1200 , GLY A:1201 , ARG A:1253 , LEU A:1256 , GLY A:1269 , HOH A:1758 , HOH A:1764BINDING SITE FOR RESIDUE 0US A 1501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FOB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:1190 -Pro A:1191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FOB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FOB)

(-) Exons   (0, 0)

(no "Exon" information available for 4FOB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:295
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4foba_ A: automated matches                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeehhhhh...hhh.eeeeeeeee....eeeeeee...eeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee......eeeee....eehhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee........eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fob A 1093 NPNYSFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIEYG 1402
                                  1102      1112      1122      1132   || 1148      1158      1168      1178      1188      1198      1208      1221      1231      1241      1251      1261      1271      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397     
                                                                    1136|                                                                    1215|                                                         1280|                                                                                                                   
                                                                     1143                                                                     1219                                                          1287
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FOB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FOB)

(-) Gene Ontology  (30, 30)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALK_HUMAN | Q9UM73: 2kup 2kuq 2xb7 2xba 2xp2 2yfx 2yhv 2yjr 2yjs 2ys5 2yt2 3aox 3l9p 3lcs 3lct 4anl 4anq 4ans 4ccb 4ccu 4cd0 4cli 4clj 4cmo 4cmt 4cmu 4cnh 4ctb 4ctc 4dce 4fnw 4fnx 4fny 4fnz 4foc 4fod 4joa 4mkc 4tt7 4z55 5a9u 5aa8 5aa9 5aaa 5aab 5aac 5fto 5ftq 5imx 5iug 5iuh 5iui 5j7h 5kz0

(-) Related Entries Specified in the PDB File

4fnw 4fnx 4fny 4fnz 4foc 4fod