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(-) Description

Title :  CRYSTAL STRUCTURE OF THE APO F1174L ANAPLASTIC LYMPHOMA KINASE CATALYTIC DOMAIN
 
Authors :  D. A. Whittington, L. F. Epstein, H. Chen
Date :  20 Jun 12  (Deposition) - 29 Aug 12  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Receptor Tyrosine Kinase, Inhibitor, Crizotinib, Neuroblastoma, Cd246, Phosphotransferase, Npm-Alk, Eml4-Alk, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. F. Epstein, H. Chen, R. Emkey, D. A. Whittington
The R1275Q Neuroblastoma Mutant And Certain Atp-Competitive Inhibitors Stabilize Alternative Activation Loop Conformations Of Anaplastic Lymphoma Kinase.
J. Biol. Chem. V. 287 37447 2012
PubMed-ID: 22932897  |  Reference-DOI: 10.1074/JBC.M112.391425

(-) Compounds

Molecule 1 - ALK TYROSINE KINASE RECEPTOR
    ChainsA
    EC Number2.7.10.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentKINASE DOMAIN, UNP RESIDUES 1084-1410
    GeneALK
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymANAPLASTIC LYMPHOMA KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:1351 , LYS A:1352 , HOH A:1637 , HOH A:1746BINDING SITE FOR RESIDUE GOL A 1501
2AC2SOFTWAREILE A:1171 , LEU A:1174 , ASN A:1175 , ARG A:1181 , CYS A:1182 , LEU A:1224 , HOH A:1618 , HOH A:1673 , HOH A:1745 , HOH A:1861BINDING SITE FOR RESIDUE GOL A 1502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FNW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:1190 -Pro A:1191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FNW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FNW)

(-) Exons   (0, 0)

(no "Exon" information available for 4FNW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4fnwa_ A: automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh..eee..eeehhhhh...hhh.eeeeeeee..eeeeee...eeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee......eeeee....eehhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee........eee..hhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fnw A 1084 RTSTIMTDYNPNYSFAGKTSSISDLKEVPRKNITLIRGLGGEVYEGQVSSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIEYGPLV 1405
                                  1093      1103      1113      1123|     1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243      1253      1263      1273     |1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401    
                                                                1123|    1136|                                                                                                                                    1279|                                                                                                                     
                                                                 1128     1143                                                                                                                                     1288                                                                                                                     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FNW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FNW)

(-) Gene Ontology  (30, 30)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALK_HUMAN | Q9UM732kup 2kuq 2xb7 2xba 2xp2 2yfx 2yhv 2yjr 2yjs 2ys5 2yt2 3aox 3l9p 3lcs 3lct 4anl 4anq 4ans 4ccb 4ccu 4cd0 4cli 4clj 4cmo 4cmt 4cmu 4cnh 4ctb 4ctc 4dce 4fnx 4fny 4fnz 4fob 4foc 4fod 4joa 4mkc 4tt7 4z55 5a9u 5aa8 5aa9 5aaa 5aab 5aac 5fto 5ftq 5imx 5iug 5iuh 5iui 5j7h 5kz0

(-) Related Entries Specified in the PDB File

4fnx 4fny 4fnz 4fob 4foc 4fod