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(-) Description

Title :  STRUCTURE OF C1156Y,L1198F MUTANT HUMAN ANAPLASTIC LYMPHOMA KINASE IN COMPLEX WITH CRIZOTINIB
 
Authors :  M. Mctigue, Y. Deng, W. Liu, A. Brooun, A. Stewart
Date :  23 Jul 15  (Deposition) - 08 Jun 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Keywords :  Transferase, Receptor Tyrosine Kinase, Anaplastic Lymphoma Kinase, Inhibitor, Mutant (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. T. Shaw, L. Friboulet, I. Leshchiner, J. F. Gainor, S. Bergqvist, A. Brooun, B. J. Burke, Y. Deng, W. Liu, L. Dardaei, R. L. Frias, K. R. Schultz, J. Logan, L. P. James, T. Smeal, S. Timofeevski, R. Katayama, A. J. Iafrate, L. Le, M. Mctigue, G. Getz, T. W. Johnson, J. A. Engelman
Resensitization To Crizotinib By The Lorlatinib Alk Resistance Mutation L1198F.
N. Engl. J. Med. V. 374 54 2016
PubMed-ID: 26698910  |  Reference-DOI: 10.1056/NEJMOA1508887

(-) Compounds

Molecule 1 - ALK TYROSINE KINASE RECEPTOR
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: TYROSINE KINASE DOMAIN, UNP RESIDUES 1093-1411
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: NONPHOSPHORYLATED
    Synonym: ANAPLASTIC LYMPHOMA KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1VGH1Ligand/Ion3-[(1R)-1-(2,6-DICHLORO-3-FLUOROPHENYL)ETHOXY]-5-(1-PIPERIDIN-4-YL-1H-PYRAZOL-4-YL)PYRIDIN-2-AMINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1VGH1Ligand/Ion3-[(1R)-1-(2,6-DICHLORO-3-FLUOROPHENYL)ETHOXY]-5-(1-PIPERIDIN-4-YL-1H-PYRAZOL-4-YL)PYRIDIN-2-AMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:1122 , ALA A:1148 , GLU A:1197 , MET A:1199 , ALA A:1200 , GLY A:1202 , ARG A:1253 , ASN A:1254 , LEU A:1256 , GLY A:1269 , ASP A:1270BINDING SITE FOR RESIDUE VGH A9000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AAB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:1190 -Pro A:1191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AAB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AAB)

(-) Exons   (0, 0)

(no "Exon" information available for 5AAB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..eeee.hhh...hhhhheeeee......eeeee...eeeeeee....hhhhhhhhhhhhhhhhh........eeeee.....eeeeee....eehhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee........eee..hhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5aab A 1093 NPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGGEVYEGQVPLQVAVKTLPEVYSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLEFMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIEYG 1402
                                  1102      1112      1122  ||  1134||    1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1288      1298      1308      1318      1328      1338      1348      1358      1368      1378      1388      1398    
                                                         1125|   1135|                                                                                                                                   1279|                                                                                                                    
                                                          1128    1144                                                                                                                                    1286
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AAB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AAB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AAB)

(-) Gene Ontology  (30, 30)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALK_HUMAN | Q9UM73: 2kup 2kuq 2xb7 2xba 2xp2 2yfx 2yhv 2yjr 2yjs 2ys5 2yt2 3aox 3l9p 3lcs 3lct 4anl 4anq 4ans 4ccb 4ccu 4cd0 4cli 4clj 4cmo 4cmt 4cmu 4cnh 4ctb 4ctc 4dce 4fnw 4fnx 4fny 4fnz 4fob 4foc 4fod 4joa 4mkc 4tt7 4z55 5a9u 5aa8 5aa9 5aaa 5aac 5fto 5ftq 5imx 5iug 5iuh 5iui 5j7h 5kz0

(-) Related Entries Specified in the PDB File

5a9u STRUCTURE OF C1156Y MUTANT HUMAN ANAPLASTIC LYMPHOMA KINASE IN COMPLEX WITH PF-06463922 ((10R)-7-AMINO-12 -FLUORO-2,10,16-TRIMETHYL-15-OXO-10,15,16,17- TETRAHYDRO-2H-8,4-(METHENO)PYRAZOLO(4,3-H)(2,5, 11)BENZOXADIAZACYCLOTETRADECINE-3-CARBONITRILE).
5aa8 STRUCTURE OF C1156Y,L1198F MUTANT HUMAN ANAPLASTIC LYMPHOMA KINASE IN COMPLEX WITH PF-06463922 ((10R)-7- AMINO-12-FLUORO-2,10,16-TRIMETHYL-15-OXO-10,15, 16,17-TETRAHYDRO-2H-8,4-(METHENO)PYRAZOLO(4,3-H)( 2,5,11)BENZOXADIAZACYCLOTETRADECINE-3-CARBONITRILE).
5aa9 STRUCTURE OF L1198F MUTANT HUMAN ANAPLASTIC LYMPHOMA KINASE IN COMPLEX WITH PF-06463922 ((10R)-7-AMINO-12 -FLUORO-2,10,16-TRIMETHYL-15-OXO-10,15,16,17- TETRAHYDRO-2H-8,4-(METHENO)PYRAZOLO(4,3-H)(2,5, 11)BENZOXADIAZACYCLOTETRADECINE-3-CARBONITRILE).
5aaa STRUCTURE OF L1198F MUTANT HUMAN ANAPLASTIC LYMPHOMA KINASE IN COMPLEX WITH CRIZOTINIB
5aac STRUCTURE OF C1156Y MUTANT HUMAN ANAPLASTIC LYMPHOMA KINASE IN COMPLEX WITH CRIZOTINIB