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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ANAPLASTIC LYMPHOMA KINASE (ALK) IN COMPLEX WITH 5D
 
Authors :  C. H. Tu, S. Y. Wu
Date :  18 Mar 16  (Deposition) - 18 May 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Catalytic Domain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. H. Tu, W. H. Lin, Y. H. Peng, T. Hsu, J. S. Wu, C. Y. Chang, C. T. Lu, P. C. Lyu, C. Shih, W. T. Jiaang, S. Y. Wu
Pyrazolylamine Derivatives Reveal The Conformational Switching Between Type I And Type Ii Binding Modes Of Anaplastic Lymphoma Kinase (Alk).
J. Med. Chem. V. 59 3906 2016
PubMed-ID: 27031565  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00106

(-) Compounds

Molecule 1 - ALK TYROSINE KINASE RECEPTOR
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector: PBAKPAK-8
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 1084-1410
    Gene: ALK
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ANAPLASTIC LYMPHOMA KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
134Y1Ligand/Ion4-[(4-METHYLPIPERAZIN-1-YL)METHYL]-N-{3-[3-METHYL-4-({[5-(PROPAN-2-YL)-1,2-OXAZOL-3-YL]CARBAMOYL}AMINO)PHENYL]-1H-PYRAZOL-5-YL}BENZAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:1148 , GLU A:1167 , ILE A:1171 , PHE A:1174 , VAL A:1180 , LEU A:1196 , GLU A:1197 , MET A:1199 , ALA A:1200 , GLY A:1201 , GLY A:1202 , PHE A:1245 , HIS A:1247 , LEU A:1256 , GLY A:1269 , ASP A:1270 , HOH A:1665binding site for residue 34Y A 1501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IUH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:1190 -Pro A:1191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IUH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IUH)

(-) Exons   (0, 0)

(no "Exon" information available for 5IUH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhh.eeeeee...eeeeee...eeeeeee.....hhhhhhhhhhhhhhhhh........eeeee......eeeee....eehhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee........eee..........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5iuh A 1093 NPNYSFAGKTSSISDLKEVPRKNITLIRGLGEVYEGQVSGPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMACAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIEYGPL 1404
                                  1102      1112      1122||    1137|     1153      1163      1173      1183      1193      1203      1213 ||   1226      1236      1246      1256      1266      1289      1299      1309      1319      1329      1339      1349      1359      1369      1379      1389      1399     
                                                       1123|    1137|                                                                   1215|                                                   1274|                                                                                                                    
                                                        1129     1144                                                                    1219                                                    1288
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IUH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IUH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IUH)

(-) Gene Ontology  (30, 30)

Asymmetric/Biological Unit(hide GO term definitions)

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  5iuh
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  ALK_HUMAN | Q9UM73
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALK_HUMAN | Q9UM73: 2kup 2kuq 2xb7 2xba 2xp2 2yfx 2yhv 2yjr 2yjs 2ys5 2yt2 3aox 3l9p 3lcs 3lct 4anl 4anq 4ans 4ccb 4ccu 4cd0 4cli 4clj 4cmo 4cmt 4cmu 4cnh 4ctb 4ctc 4dce 4fnw 4fnx 4fny 4fnz 4fob 4foc 4fod 4joa 4mkc 4tt7 4z55 5a9u 5aa8 5aa9 5aaa 5aab 5aac 5fto 5ftq 5imx 5iug 5iui 5j7h 5kz0

(-) Related Entries Specified in the PDB File

5iug 5iui