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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ALK KINASE DOMAIN IN COMPLEX WITH ENTRECTINIB
 
Authors :  R. Bossi, G. Canevari, M. Fasolini, M. Menichincheri, E. Ardini, P. Mag N. Avanzi, P. Banfi, L. Buffa, L. Ceriani, M. Colombo, L. Corti, D. Dona E. Felder, C. Fiorelli, F. Fiorentini, A. Galvani, A. Isacchi, A. Lombardi Borgia, C. Marchionni, M. Nesi, C. Orrenius, A. Panzeri, E. Perrone, E. Pesenti, L. Rusconi, M. B. Saccardo, E. Vanotti, P. Orsi
Date :  14 Jan 16  (Deposition) - 06 Apr 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.22
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Kinase Inhibitors, Cancer, Drug Discovery, Alk, Trk, Ros1, Anaplastic Large Cell Lymphoma (Alcl), Non Small Cell Large Cancer (Nsclc), Neuroblastoma, Colorectal Cancer (Crc) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Menichincheri, E. Ardini, P. Magnaghi, N. Avanzi, P. Banfi, R. T. Bossi, L. Buffa, G. Canevari, L. Ceriani, M. Colombo, L. Corti, D. Donati, M. Fasolini, E. R. Felder, C. Fiorelli, F. Fiorentini, A. Galvani, A. Isacchi, A. L. Borgia, C. Marchionni, M. Nesi, C. Orrenius, A. Panzeri, E. Pesenti, L. Rusconi, B. M. Saccardo, E. Vanotti, E. Perrone, P. Orsini
Discovery Of Entrectinib: A New 3-Aminoindazole As A Potent Anaplastic Lymphoma Kinase (Alk), C-Ros Oncogene 1 Kinase (Ros1), And Pan-Tropomyosin Receptor Kinases (Pan-Trks) Inhibitor.
J. Med. Chem. V. 59 3392 2016
PubMed-ID: 27003761  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00064

(-) Compounds

Molecule 1 - ALK TYROSINE KINASE RECEPTOR
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PVL-GST-ALK-KD
    Expression System Taxid: 7108
    Expression System Vector: PVL1393
    Expression System Vector Type: PLASMID
    Fragment: KINASE DOMAIN, UNP RESIDUES 1094-1407
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ANAPLASTIC LYMPHOMA KINASE, ALK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1YMX1Ligand/IonENTRECTINIB

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:1122 , GLY A:1123 , PHE A:1127 , VAL A:1130 , ALA A:1148 , LEU A:1196 , GLU A:1197 , MET A:1199 , ALA A:1200 , GLY A:1201 , GLY A:1202 , ASP A:1203 , ARG A:1253 , ASN A:1254 , LEU A:1256 , GLY A:1269 , ASP A:1270BINDING SITE FOR RESIDUE YMX A2402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FTO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:1190 -Pro A:1191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FTO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FTO)

(-) Exons   (0, 0)

(no "Exon" information available for 5FTO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:298
                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeehhhhh...hhh.eeeeeeeeee..eeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee......eeeee....eehhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee........eee..hhhhhhhhh.....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fto A 1093 GPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIEY 1401
                                  1102      1112      1122      1132     |1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266      1276  ||  1293      1303      1313      1323      1333      1343      1353      1363      1373      1383      1393        
                                                                      1138|                                                                                                                                    1279|                                                                                                                  
                                                                       1143                                                                                                                                     1287
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FTO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FTO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FTO)

(-) Gene Ontology  (30, 30)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALK_HUMAN | Q9UM73: 2kup 2kuq 2xb7 2xba 2xp2 2yfx 2yhv 2yjr 2yjs 2ys5 2yt2 3aox 3l9p 3lcs 3lct 4anl 4anq 4ans 4ccb 4ccu 4cd0 4cli 4clj 4cmo 4cmt 4cmu 4cnh 4ctb 4ctc 4dce 4fnw 4fnx 4fny 4fnz 4fob 4foc 4fod 4joa 4mkc 4tt7 4z55 5a9u 5aa8 5aa9 5aaa 5aab 5aac 5ftq 5imx 5iug 5iuh 5iui 5j7h 5kz0

(-) Related Entries Specified in the PDB File

5ftq CRYSTAL STRUCTURE OF THE ALK KINASE DOMAIN IN COMPLEX WITH CMPD 17