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(-) Description

Title :  MACROPHAGE MIGRATION INHIBITORY FACTOR COVALENTLY COMPLEXED WITH PHENETHYLISOTHIOCYANATE
 
Authors :  J. D. A. Tyndall, J. Bernhagen, M. B. Hampton, S. M. Wilbanks, M. T. Rutle
Date :  08 May 12  (Deposition) - 06 Jun 12  (Release) - 26 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Cytokine, Tautomerase, Phenethylisothiocyanate, Isomerase, Isomerase- Isomerase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. A. Tyndall, H. Lue, M. T. Rutledge, J. Bernhagen, M. B. Hampton, S. M. Wilbanks
Macrophage Migration Inhibitory Factor Covalently Complexed With Phenethyl Isothiocyanate
Acta Crystallogr. , Sect. F V. 68 999 2012
PubMed-ID: 22949182  |  Reference-DOI: 10.1107/S1744309112030552

(-) Compounds

Molecule 1 - MACROPHAGE MIGRATION INHIBITORY FACTOR
    Chains: A, B, C
    EC Number: 5.3.2.1, 5.3.3.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETLLB
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GLIF, MIF, MMIF
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MIF, GLYCOSYLATION-INHIBITING FACTOR, GIF, L-DOPACHROME ISOMERASE, L-DOPACHROME TAUTOMERASE, PHENYLPYRUVATE TAUTOMERASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1IPA4Ligand/IonISOPROPYL ALCOHOL
2LE23Ligand/IonN-(2-PHENYLETHYL)THIOFORMAMIDE
3SO44Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:2 , MET A:3 , LYS A:33 , TYR A:37 , HIS A:63 , SER A:64 , ILE A:65 , VAL A:107 , TYR C:96 , ASN C:98BINDING SITE FOR RESIDUE LE2 A 201
02AC2SOFTWAREARG A:87 , GLY B:66 , LYS B:67 , HOH B:329 , HOH B:344 , HOH B:391BINDING SITE FOR RESIDUE SO4 A 202
03AC3SOFTWAREGLY A:69 , GLY A:70 , ALA A:71 , GLN A:72BINDING SITE FOR RESIDUE IPA A 203
04AC4SOFTWARETYR A:96 , ASN A:98 , PRO B:2 , MET B:3 , LYS B:33 , TYR B:37 , HIS B:63 , ILE B:65 , VAL B:107BINDING SITE FOR RESIDUE LE2 B 201
05AC5SOFTWAREALA B:71 , ARG B:74 , HOH B:312BINDING SITE FOR RESIDUE SO4 B 202
06AC6SOFTWAREGLN B:36 , TRP B:109 , HOH B:315 , HOH B:317 , GLY C:51BINDING SITE FOR RESIDUE IPA B 203
07AC7SOFTWAREGLY B:69 , GLY B:70 , ALA B:71 , GLN B:72BINDING SITE FOR RESIDUE IPA B 204
08AC8SOFTWARETYR B:96 , ASN B:98 , PRO C:2 , MET C:3 , TYR C:37 , HIS C:63 , SER C:64 , ILE C:65 , VAL C:107BINDING SITE FOR RESIDUE LE2 C 201
09AC9SOFTWAREGLY A:66 , LYS A:67 , HOH A:319 , HOH A:362 , HOH A:382 , ARG C:87BINDING SITE FOR RESIDUE SO4 C 202
10BC1SOFTWAREALA C:71 , ARG C:74 , HOH C:313BINDING SITE FOR RESIDUE SO4 C 203
11BC2SOFTWAREGLY C:69 , GLY C:70 , ALA C:71 , GLN C:72 , HOH C:343BINDING SITE FOR RESIDUE IPA C 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F2K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F2K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F2K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F2K)

(-) Exons   (0, 0)

(no "Exon" information available for 4F2K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains d4f2ka_ A: Microphage migration inhibition factor (MIF)                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4f2k A   2 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 115
                                    11        21        31        41        51        61        71        81        91       101       111    


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains d4f2kb_ B: Microphage migration inhibition factor (MIF)                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4f2k B   2 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 115
                                    11        21        31        41        51        61        71        81        91       101       111    


Chain C from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains d4f2kc_ C: Microphage migration inhibition factor (MIF)                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhh..hhhhhhhhhhhhhhh.hhhh.eeeee...eeee.......eeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeee.hhh.eee..ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4f2k C   2 PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 115
                                    11        21        31        41        51        61        71        81        91       101       111
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F2K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F2K)

(-) Gene Ontology  (54, 54)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        MIF_HUMAN | P14174: 1ca7 1cgq 1gcz 1gd0 1gif 1ljt 1mif 1p1g 2ooh 2oow 2ooz 3b9s 3ce4 3djh 3dji 3hof 3ijg 3ijj 3jsf 3jsg 3jtu 3l5p 3l5r 3l5s 3l5t 3l5u 3l5v 3smb 3smc 3u18 3wnr 3wns 3wnt 4etg 4eui 4evg 4grn 4gro 4grp 4grq 4grr 4gru 4gum 4k9g 4osf 4oyq 4p01 4p0h 4pkk 4pkz 4plu 4trf 4tru 4wr8 4wrb 4xx7 4xx8 4z15 4z1t 4z1u 5b4o 5bs9 5bsc 5bsi 5bsj 5cg4 5eiz 5hvs 5hvt 5hvv 5j7p 5j7q

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