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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE RYANODINE RECEPTOR 2 (2699-2904)
 
Authors :  Z. Yuchi, K. Lau, F. Van Petegem
Date :  24 Apr 12  (Deposition) - 13 Jun 12  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Ryanodine Receptor Calcium Release Channel, Phosphorylation, Muscle, Cardiac, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Yuchi, K. Lau, F. Van Petegem
Disease Mutations In The Ryanodine Receptor Central Region: Crystal Structures Of A Phosphorylation Hot Spot Domain.
Structure V. 20 1201 2012
PubMed-ID: 22705209  |  Reference-DOI: 10.1016/J.STR.2012.04.015

(-) Compounds

Molecule 1 - RYANODINE RECEPTOR 2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28HMT
    Expression System Strain: ROSETTA(DE3)PLACI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RYR2
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: RYR-2, RYR2, CARDIAC MUSCLE RYANODINE RECEPTOR, CARDIAC MUSCLE RYANODINE RECEPTOR-CALCIUM RELEASE CHANNEL, TYPE 2 RYANODINE RECEPTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MSE13Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 13)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE13Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:2851 , ARG B:2834BINDING SITE FOR RESIDUE CL B 3001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ETV)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee....hhhhhh.hhhhh.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhheeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4etv A 2700 FNPQPVDTSNITIPEKLEYFINKYAEHSHDKWSmDKLANGWIYGEIYSDSSKIQPLmKPYKLLSEKEKEIYRWPIKESLKTmLAWGWRIERTREGDSmALYNAAHGYSPRAIDmSNVTLSRDLHAmAEmmAENYHNIWAKKKKLELESKGGGNHPLLVPYDTLTAAEKAKDREKAQDIFKFLQISGYVVSR 2904
                                  2709      2719      2729   |  2739      2749      2759      2769      2779 |    2789      2799 ||   2823   |  2833     |2843      2853      2863      2873      2883      2893      2903 
                                                          2733-MSE               2756-MSE                 2781-MSE        2797-MSE|       2827-MSE    2839-MSE                                                             
                                                                                                                              2801|                      2842-MSE                                                          
                                                                                                                               2816                       2843-MSE                                                         


Chain B from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4etv B 2699 NFNPQPVDTSNITIPEKLEYFINKYAEHSHDSEKEKEIYRWPIKESLKTmLAWGWRIERTRDmSNVTLSRDLHAmAEmmAENYHNIWAKKKKLELENHPLLVPYDTLTAAEKAKDREKAQDIFKFLQISGYVVSR 2904
                                  2708      2718      2728||    2771      2781      2791|||   2834    | 2844      2854     |2869      2879      2889      2899     
                                                       2729|              2781-MSE   2792||        2839-MSE             2860|                                      
                                                        2763                          2826|           2842-MSE           2866                                      
                                                                                       2827-MSE        2843-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ETV)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (69, 69)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RYR2_MOUSE | E9Q401: 2mc2 3im5 3im6 3im7 3qr5 4kei 4kej 4kek 4l4h 4l4i 4p9i 4p9l 5c33

(-) Related Entries Specified in the PDB File

4ert RYR1 2734-2940
4erv RYR3 2597-2800
4esu RYR1 S2776M
4ett RYR1 E2764K
4etu RYR1 R2939S