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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN RYANODINE RECEPTOR 3 (2597-2800)
 
Authors :  Z. Yuchi, K. Lau, F. Van Petegem
Date :  20 Apr 12  (Deposition) - 13 Jun 12  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Ryanodine Receptor Calcium Release Channel, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Yuchi, K. Lau, F. Van Petegem
Disease Mutations In The Ryanodine Receptor Central Region: Crystal Structures Of A Phosphorylation Hot Spot Domain.
Structure V. 20 1201 2012
PubMed-ID: 22705209  |  Reference-DOI: 10.1016/J.STR.2012.04.015

(-) Compounds

Molecule 1 - RYANODINE RECEPTOR 3
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28HMT
    Expression System StrainROSETTA(DE3)PLACI
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneRYR3, HBRR
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymRYR-3, RYR3, BRAIN RYANODINE RECEPTOR-CALCIUM RELEASE CHANNEL, BRAIN-TYPE RYANODINE RECEPTOR, TYPE 3 RYANODINE RECEPTOR

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (1x)A
Biological Unit 2 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO43Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO43Ligand/IonSULFATE ION
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2SO46Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:2747 , LYS A:2750 , LYS A:2751 , GOL A:2906 , HOH A:3050 , HOH A:3100 , HOH A:3133 , HOH A:3151BINDING SITE FOR RESIDUE SO4 A 2901
2AC2SOFTWAREALA A:2774 , LYS A:2777 , ARG A:2781BINDING SITE FOR RESIDUE SO4 A 2902
3AC3SOFTWARETRP A:2629 , LYS A:2633 , LYS A:2779 , GOL A:2904 , HOH A:3092 , HOH A:3206BINDING SITE FOR RESIDUE SO4 A 2903
4AC4SOFTWARELYS A:2633 , TRP A:2638 , HIS A:2651 , ALA A:2775 , PHE A:2778 , SO4 A:2903 , HOH A:3092 , HOH A:3168 , HOH A:3206BINDING SITE FOR RESIDUE GOL A 2904
5AC5SOFTWARELYS A:2663 , PRO A:2764 , VAL A:2767 , THR A:2771 , GLU A:2776 , HOH A:3016 , HOH A:3201BINDING SITE FOR RESIDUE GOL A 2905
6AC6SOFTWARETRP A:2747 , SO4 A:2901 , HOH A:3087 , HOH A:3205 , HOH A:3208BINDING SITE FOR RESIDUE GOL A 2906

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ERV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ERV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ERV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ERV)

(-) Exons   (0, 0)

(no "Exon" information available for 4ERV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4erv A 2598 FDPKPINTMNFSLPEKLEYIVTKYAEHSHDKWACDKSQSGWKYGISLDENVKTHPLIRPFKTLTEKEKEIYRWPARESLKTMLAVGWTVERTKGEALVQQRENEKLRSVYSPAPLDLSNVVLSRELQGMVEVVAENYHNIWAKKKKLELESKGGGSHPLLVPYDTLTAAEKFKDREKAQDLFKFLQVNGIIVSR 2800
                                  2607      2617      2627      2637      2647      2657      2667      2677      2687  ||  2698      2716      2726      2736      2746      2756      2766      2776      2786      2796    
                                                                                                                     2690|           2707|                                                                                    
                                                                                                                      2692            2716                                                                                    

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ERV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ERV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ERV)

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4ERV)

(-) Related Entries Specified in the PDB File

4ert RYR1 2734-2940
4esu RYR1 S2776M
4ett RYR1 E2764K
4etu RYR1 R2939S
4etv RYR2 K2879A