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(-) Description

Title :  CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 MUTANT R2939S
 
Authors :  Z. Yuchi, K. Lau, F. Van Petegem
Date :  24 Apr 12  (Deposition) - 13 Jun 12  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.19
Chains :  Asym./Biol. Unit :  A
Keywords :  Ryanodine Receptor Calcium Release Channel, Phosphorylation, Muscle, Skeletal, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Yuchi, K. Lau, F. Van Petegem
Disease Mutations In The Ryanodine Receptor Central Region: Crystal Structures Of A Phosphorylation Hot Spot Domain.
Structure V. 20 1201 2012
PubMed-ID: 22705209  |  Reference-DOI: 10.1016/J.STR.2012.04.015

(-) Compounds

Molecule 1 - RYANODINE RECEPTOR 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28HMT
    Expression System Strain: ROSETTA(DE3)PLACI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RYR1
    Mutation: YES
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: RYR-1, RYR1, SKELETAL MUSCLE CALCIUM RELEASE CHANNEL, SKELETAL MUSCLE RYANODINE RECEPTOR, SKELETAL MUSCLE-TYPE RYANODINE RECEPTOR, TYPE 1 RYANODINE RECEPTOR

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:2736 , ARG A:2738 , LYS A:2825 , ALA A:2826 , GLU A:2880 , ASN A:2884 , HOH A:3104 , HOH A:3175BINDING SITE FOR RESIDUE GOL A 3001
2AC2SOFTWARELEU A:2785 , HIS A:2883 , LEU A:2904 , ASP A:2919BINDING SITE FOR RESIDUE GOL A 3002
3AC3SOFTWAREVAL A:2740 , GLU A:2741 , THR A:2742 , LEU A:2743BINDING SITE FOR RESIDUE GOL A 3003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ETU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ETU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ETU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ETU)

(-) Exons   (0, 0)

(no "Exon" information available for 4ETU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:183
                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4etu A 2734 NFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRPYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEEYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPLLVPYDTLTAKEKARDREKAQELLKFLQMNGYAVTS 2939
                                  2743      2753      2763      2773      2783      2793      2803      2813      2823      2856      2866      2876      2886      2896      2906      2916      2926      2936   
                                                                                                                          2831|                                                                                    
                                                                                                                           2855
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ETU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ETU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ETU)

(-) Gene Ontology  (30, 30)

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  RYR1_RABIT | P11716
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RYR1_RABIT | P11716: 2bcx 2xoa 3hsm 3ila 3j8h 3rqr 4ert 4esu 4ett 4i0y 4i1e 4i2s 4i37 4i3n 4i6i 4i7i 4i8m 4i96 4p9j 4uwa 4uwe 5c30 5gky 5gkz 5gl0 5gl1 5j8v 5t15 5t9m 5t9n 5t9r 5t9s 5t9v 5ta3 5tal 5tam 5tan 5tap 5taq 5tas 5tat 5tau 5tav 5taw 5tax 5tay 5taz 5tb0 5tb1 5tb2 5tb3 5tb4

(-) Related Entries Specified in the PDB File

4ert RYR1 2734-2940
4erv RYR3 2597-2800
4esu RYR1 S2776M
4ett RYR1 E2764K
4etv RYR2 K2879A