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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE RYANODINE RECEPTOR 2 (1-217) DISEASE MUTANT R176Q
 
Authors :  L. Kimlicka, F. Van Petegem
Date :  25 Apr 13  (Deposition) - 04 Sep 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Ca2+ Release, Ion Channel, Er/Sr Membrane, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. J. Amador, L. Kimlicka, P. B. Stathopulos, G. M. Gasmi-Seabrook, D. H. Maclennan, F. Van Petegem, M. Ikura
Type 2 Ryanodine Receptor Domain A Contains A Unique And Dynamic Alpha-Helix That Transitions To A Beta-Strand In A Mutant Linked With A Heritable Cardiomyopathy.
J. Mol. Biol. V. 425 4034 2013
PubMed-ID: 23978697  |  Reference-DOI: 10.1016/J.JMB.2013.08.015

(-) Compounds

Molecule 1 - RYANODINE RECEPTOR 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA
    Expression System Taxid: 511693
    Fragment: N-TERMINAL DOMAIN (UNP RESIDUES 1-217)
    Gene: RYR2
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: RYR-2, RYR2, CARDIAC MUSCLE RYANODINE RECEPTOR, CARDIAC MUSCLE RYANODINE RECEPTOR-CALCIUM RELEASE CHANNEL, TYPE 2 RYANODINE RECEPTOR, CARDIAC CA2+ RELEASE CHANNEL

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:196 , GLY A:197 , ASN A:198 , SER A:199 , SER A:200 , HIS A:202BINDING SITE FOR RESIDUE SO4 A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KEK)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:169 -Ser A:170

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KEK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KEK)

(-) Exons   (0, 0)

(no "Exon" information available for 4KEK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains d4keka_ A: automated matches                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee....eeeeeee.......eeee.......hhhhh.eeeeeeehhhhhhhhhhh........eeeeee.....eeee......eeeeee........eeeeee.............eeeee.....eeeeee....eeeeee......eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kek A  13 FLRTDDEVVLQCTATIHKEQQKLCLAAEGNRLCFLESTSKNVPPDLSICTFVLEQSLSVRALQEMLANTRTLLYGHAILLRHSYSGMYLCCLSTSLAFDVGLQEDTTGEACWWTIHPARSEGEKVQVGDDLILVSVSSERYLHLSYGNSSWHVDAAFQQTLWSVAPI 217
                                    22        32       |44        56        66        76       111       121       131    || 147       157       170       180       190       200       210       
                                                      40|        53|                           85|                      136|                   165|                                                
                                                       43         56                           111                       143                    169
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KEK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KEK)

(-) Gene Ontology  (69, 69)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RYR2_MOUSE | E9Q401: 2mc2 3im5 3im6 3im7 3qr5 4etv 4kei 4kej 4l4h 4l4i 4p9i 4p9l 5c33

(-) Related Entries Specified in the PDB File

3im5 CRYSTAL STRUCTURE OF MOUSE RYANODINE RECEPTOR 2 (RESIDUES 1-217) WILD TYPE
3im6 CRYSTAL STRUCTURE OF MOUSE RYANODINE RECEPTOR 2 (RESIDUES 1-217) DISEASE MUTANT V186M
3im7 CRYSTAL STRUCTURE OF MOUSE RYANODINE RECEPTOR 2 (RESIDUES 1-217) DISEASE MUTANT A77V
3qr5 CRYSTAL STRUCTURE OF MOUSE RYANODINE RECEPTOR 2 (RESIDUES 1-217) DISEASE MUTANT EXON 3 DELETION
4kei
4kej