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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE RYANODINE RECEPTOR 2 SPRY1 DOMAIN
 
Authors :  Z. Yuchi, F. Van Petegem
Date :  16 Jun 15  (Deposition) - 05 Aug 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.21
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Spry, Ligand-Binding, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Yuchi, S. M. Yuen, K. Lau, A. Q. Underhill, R. L. Cornea, J. D. Fessenden, F. Van Petegem
Crystal Structures Of Ryanodine Receptor Spry1 And Tandem-Repeat Domains Reveal A Critical Fkbp12 Binding Determinant.
Nat Commun V. 6 7947 2015
PubMed-ID: 26245150  |  Reference-DOI: 10.1038/NCOMMS8947

(-) Compounds

Molecule 1 - RYANODINE RECEPTOR 2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28-HMT
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: SPRY1 DOMAIN (UNP RESIDUES 650-844)
    Gene: RYR2
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: RYR2, CARDIAC MUSCLE RYANODINE RECEPTOR, CARDIAC MUSCLE RYANODINE RECEPTOR-CALCIUM RELEASE CHANNEL, TYPE 2 RYANODINE RECEPTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2CME2Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
3IPA2Ligand/IonISOPROPYL ALCOHOL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
3IPA1Ligand/IonISOPROPYL ALCOHOL
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
3IPA1Ligand/IonISOPROPYL ALCOHOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:836 , CL A:902 , HOH A:1094 , HOH B:1005binding site for residue IPA A 901
2AC2SOFTWARESER A:653 , IPA A:901binding site for residue CL A 902
3AC3SOFTWAREPRO A:815 , PRO A:817 , ASN B:745 , HIS B:747 , ARG B:750binding site for residue IPA B 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C33)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:763 -Pro A:764
2Ala B:763 -Pro B:764

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C33)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C33)

(-) Exons   (0, 0)

(no "Exon" information available for 5C33)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..............eeeeeeeeee.....eeeeeee.hhheeehhheee...........eeee...eeee..eeee.............eeeeeee....eeeeee..ee.............eeeeeee....eeeee................ee.hhhh..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c33 A 652 VSSMRPNIFLGVSEGSAQYKKWYYELMVDHTEATHLRVGWASTEGYSPYPGGGEEWGGNGVGDDLFSYGFDGLHLWSGCIARTVSSPNQHLLRTDDVISCcLDLSAPSISFRINGQPVQGMFENFNIDGLFFPVVSFSAGIKVRFLLGGRHGEFKFLPPPGYAACYEAVLLKVEHSREYK 841
                                   661       671       681 ||    697       707       717       727       737       747       757|      767       777       787       797       807       817       827|      841
                                                         683|                                                                 758-CME                                                              827|         
                                                          690                                                                                                                                       832         


Chain B from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.........eeeeeeeeee.....eeeeeee.hhheeehhheee...........eeee...eeee..eeee.............eeeeeee....eeeeee..ee....ee.......eeeeeee....eeeee................ee.hhhh......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c33 B 652 VSSMRPNIFLGVQYKKWYYELMVDHTEATHLRVGWASTEGYSPYPGGGEEWGGNGVGDDLFSYGFDGLHLWSGCIARTVSSPNQHLLRTDDVISCcLDLSAPSISFRINGQPVQGMFENFNIDGLFFPVVSFSAGIKVRFLLGGRHGEFKFLPPPGYAACYEAVLPKEKLKVEHSREY 840
                                   661 ||    676      |692       702       712       722       732       742       752     | 762       772       782       792       802       812       822       832        
                                     663|           683|                                                                 758-CME                                                                              
                                      669            690
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C33)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C33)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C33)

(-) Gene Ontology  (69, 69)

Asymmetric Unit(hide GO term definitions)

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  5c33
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  RYR2_MOUSE | E9Q401
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RYR2_MOUSE | E9Q401: 2mc2 3im5 3im6 3im7 3qr5 4etv 4kei 4kej 4kek 4l4h 4l4i 4p9i 4p9l

(-) Related Entries Specified in the PDB File

5c30