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(-) Description

Title :  CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 SPRY2 DOMAIN (1070-1246)
 
Authors :  K. Lau, F. Van Petegem
Date :  04 Apr 14  (Deposition) - 05 Nov 14  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  C  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Keywords :  Ion Channel, Calcium, Metal Transport, Signalling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Lau, F. Van Petegem
Crystal Structure Of An Ion Channel Domain
Nat Commun 2014
PubMed: search  |  Reference-DOI: 10.1038/NCOMMS6397

(-) Compounds

Molecule 1 - RYANODINE RECEPTOR 1
    Chains: C, A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA
    Expression System Taxid: 511693
    Fragment: UNP RESIDUES 1070-1246
    Gene: RYR1
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: RYR1,SKELETAL MUSCLE CALCIUM RELEASE CHANNEL,SKELETAL MUSCLE RYANODINE RECEPTOR,SKELETAL MUSCLE-TYPE RYANODINE RECEPTOR,TYPE 1 RYANODINE RECEPTOR

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x):   C
Biological Unit 2 (1x): A  
Biological Unit 3 (1x):  B 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4P9J)

(-) Sites  (0, 0)

(no "Site" information available for 4P9J)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P9J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4P9J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P9J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P9J)

(-) Exons   (0, 0)

(no "Exon" information available for 4P9J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee.hhhhh....eeeeeeee.....eeeeee...............eeeee....eee...eee.........eeeeeee....eeeeee..ee..........ee........eeeeee.....eeee...hhhhh............ee.hhhh..........hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4p9j A   -2 SNADRVRIFRAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELAYVFNGHRGQRWHLGSEPFGRPWQSGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFREIEIGDGFLPVCSLGPGQVGHLNLGQDVSSLRFFAICGLQEGFEPFAINMQRPVTTWFSKSLPQFE 1246
                              ||  1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246
                              0|                                                                                                                                                                                
                            1070                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......ee...hhhhh....eeeeeeee.....eeeeee...............eeeee....eee...eee........eeeeeeee....eeeeee..ee....................eeeeee.....eeee...hhhhh............ee.hhhh..........hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4p9j B   -2 SNADRVRIFRAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELAYVFNGHRGQRWHLGSEPFGRPWQSGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFREIEIGDGFLPVCSLGPGQVGHLNLGQDVSSLRFFAICGLQEGFEPFAINMQRPVTTWFSKSLPQFE 1246
                              ||  1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246
                              0|                                                                                                                                                                                
                            1070                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee..hhhhh....eeeeeeee.....eeeeee...............eeeee....eee...eee.........eeeeeee....eeeeee..ee..........ee........eeeeee.....eeee...hhhhh............ee.hhhh..........hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4p9j C   -2 SNADRVRIFRAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELAYVFNGHRGQRWHLGSEPFGRPWQSGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFREIEIGDGFLPVCSLGPGQVGHLNLGQDVSSLRFFAICGLQEGFEPFAINMQRPVTTWFSKSLPQFE 1246
                              ||  1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246
                              0|                                                                                                                                                                                
                            1070
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P9J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P9J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P9J)

(-) Gene Ontology  (30, 30)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RYR1_RABIT | P11716: 2bcx 2xoa 3hsm 3ila 3j8h 3rqr 4ert 4esu 4ett 4etu 4i0y 4i1e 4i2s 4i37 4i3n 4i6i 4i7i 4i8m 4i96 4uwa 4uwe 5c30 5gky 5gkz 5gl0 5gl1 5j8v 5t15 5t9m 5t9n 5t9r 5t9s 5t9v 5ta3 5tal 5tam 5tan 5tap 5taq 5tas 5tat 5tau 5tav 5taw 5tax 5tay 5taz 5tb0 5tb1 5tb2 5tb3 5tb4

(-) Related Entries Specified in the PDB File

4p9i