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(-) Description

Title :  CRYSTAL STRUCTURE OF RABBIT RYANODINE RECEPTOR 1 REPEAT12 DOMAIN
 
Authors :  Z. Yuchi, F. Van Petegem
Date :  16 Jun 15  (Deposition) - 05 Aug 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Repeat Motif, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Yuchi, S. M. Yuen, K. Lau, A. Q. Underhill, R. L. Cornea, J. D. Fessenden, F. Van Petegem
Crystal Structures Of Ryanodine Receptor Spry1 And Tandem-Repeat Domains Reveal A Critical Fkbp12 Binding Determinant.
Nat Commun V. 6 7947 2015
PubMed-ID: 26245150  |  Reference-DOI: 10.1038/NCOMMS8947

(-) Compounds

Molecule 1 - RYANODINE RECEPTOR 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28-HMT
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: REPEAT12 DOMAIN (UNP RESIDUES 857-1054)
    Gene: RYR1
    Mutation: YES
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: RYR1, SKELETAL MUSCLE CALCIUM RELEASE CHANNEL, SKELETAL MUSCLE RYANODINE RECEPTOR, SKELETAL MUSCLE-TYPE RYANODINE RECEPTOR, TYPE 1 RYANODINE RECEPTOR

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1IPA1Ligand/IonISOPROPYL ALCOHOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:975 , ARG A:976 , LEU A:977 , ARG A:1044 , HOH A:1320 , HOH A:1351 , HOH A:1389 , HOH A:1477binding site for residue IPA A 1101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C30)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5C30)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C30)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C30)

(-) Exons   (0, 0)

(no "Exon" information available for 5C30)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhh..ee.........ee....hhhhhhhhhhhhhhhhhhhhhhhhhhh...eee...hhhhhh.....hhhhh.................hhhhhhhhhhhhhh..eeee....eeee..........eee.hhhhhhhhhhhhhhhhhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5c30 A  861 IVLPPHLERIREKLAENIHELWALTRIEQGWTYGPVRDDNKRLHPALVNFHSLPEPERNYNLQMSGETLKTLLALGAHVGMADEKAEDNLKKTKLPKTYMMSNGYKPAPLDLSHVRLTPAQTTLVDRLAENGHNVWARDRVAQGWSYSPARRNPRLVPYRLLDEATKRSNRDSLAQAVRTLLGYGYNIE 1054
                                   870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1015      1025      1035      1045         
                                                                                                                                                                            1008|                                        
                                                                                                                                                                             1014
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C30)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C30)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C30)

(-) Gene Ontology  (30, 30)

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  5c30
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  RYR1_RABIT | P11716
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  RYR1_RABIT | P11716
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RYR1_RABIT | P11716: 2bcx 2xoa 3hsm 3ila 3j8h 3rqr 4ert 4esu 4ett 4etu 4i0y 4i1e 4i2s 4i37 4i3n 4i6i 4i7i 4i8m 4i96 4p9j 4uwa 4uwe 5gky 5gkz 5gl0 5gl1 5j8v 5t15 5t9m 5t9n 5t9r 5t9s 5t9v 5ta3 5tal 5tam 5tan 5tap 5taq 5tas 5tat 5tau 5tav 5taw 5tax 5tay 5taz 5tb0 5tb1 5tb2 5tb3 5tb4

(-) Related Entries Specified in the PDB File

5c33