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(-) Description

Title :  THE COMPLEX STRUCTURE OF THE MAP KINASE ERK2/OLOMOUCINE
 
Authors :  Z. Wang, B. Canagarajah, J. C. Boehm, M. H. Cobb, P. R. Young, S. Abdel- Meguid, J. L. Adams, E. J. Goldsmith
Date :  09 Jul 98  (Deposition) - 22 Jul 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Serine/Threonine-Protein Kinase, Map Kinase, Erk2 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Wang, B. J. Canagarajah, J. C. Boehm, S. Kassisa, M. H. Cobb, P. R. Young, S. Abdel-Meguid, J. L. Adams, E. J. Goldsmith
Structural Basis Of Inhibitor Selectivity In Map Kinases.
Structure V. 6 1117 1998
PubMed-ID: 9753691  |  Reference-DOI: 10.1016/S0969-2126(98)00113-0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - EXTRACELLULAR REGULATED KINASE 2
    Chains: A
    EC Number: 2.7.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Gene: ERK2
    Expression System Plasmid: NPT7-HIS6
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: MITOGEN ACTIVATED PROTEIN KINASE, MAP 2, ERK2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1OLO1Ligand/IonOLOMOUCINE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:184 , ARG A:189 , ARG A:192 , TYR A:231 , HOH A:494BINDING SITE FOR RESIDUE SO4 A 990
2AC2SOFTWAREILE A:29 , GLU A:31 , ALA A:50 , GLN A:103 , ASP A:104 , LEU A:105 , MET A:106 , GLU A:107 , LYS A:112 , LEU A:154 , HOH A:493BINDING SITE FOR RESIDUE OLO A 800

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ERK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ERK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ERK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ERK)

(-) Exons   (0, 0)

(no "Exon" information available for 4ERK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:350
                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4erka_ A: MAP kinase Erk2                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -4erkA01 A:7-105,A:335-355 Phosphorylase Kinase; domain 1                                           4erkA02 A:106-334 Transferase(Phosphotransferase) domain 1                                                                                                                                                                           4erkA01               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeee....eeeee..........eeeee.....hhhhhhhhhhhhhhhh..........eee..........eeeee......hhhhhhh....hhhhhhhhhhhhhhhhhhhhh........hhheee.....eee..........hhh............hhh..hhhhh......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh....hhhhhh...hhhhhhhhh........hhhh.....hhhhhhhhhh..........hhhhh..hhh.....hhh..................hhhhhhhhhhh.hhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4erk A   6 AAGPEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLKELIFEETARFQPG 355
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ERK)

(-) Gene Ontology  (89, 89)

Asymmetric/Biological Unit(hide GO term definitions)

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  4erk
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  2.7.1.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK01_RAT | P63086: 1erk 1gol 2erk 2fys 2gph 2z7l 3c9w 3erk 3o71 3qyw 3qyz 3r63 3zu7 3zuv 4gsb 4gt3 4gva 4i5h 4n4s 4qyy 4s2z 4s30 4s31 4s32 4s33 4s34 4xne 4xoy 4xoz 4xp0 4xp2 4xp3 4xrj 4xrl 5hd4 5hd7 5ke0 5u6i 5umo

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ERK)