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(-) Description

Title :  COMPLEX STRUCTURE OF INSULIN-LIKE GROWTH FACTOR RECEPTOR AND ISOQUINOLINEDIONE INHIBITOR
 
Authors :  W. Xu, S. C. Mayer, F. Boschelli, M. Johnson, B. Dwyer
Date :  10 Apr 08  (Deposition) - 10 Jun 08  (Release) - 09 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A (2x),B (2x),C (2x),D (2x)
Keywords :  Igfr, Protein-Inhibitor Complex, Tyrosine Kinase, Atp- Binding, Cleavage On Pair Of Basic Residues, Disease Mutation, Glycoprotein, Membrane, Nucleotide-Binding, Phosphoprotein, Polymorphism, Receptor, Transferase, Transmembrane, Tyrosine-Protein Kinase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. C. Mayer, A. L. Banker, F. Boschelli, L. Di, M. Johnson, C. H. Kenny, G. Krishnamurthy, K. Kutterer, F. Moy, S. Petusky, M. Ravi, D. Tkach, H. R. Tsou, W. Xu
Lead Identification To Generate Isoquinolinedione Inhibitors Of Insulin-Like Growth Factor Receptor (Igf-1R) For Potential Use In Cancer Treatment
Bioorg. Med. Chem. Lett. V. 18 3641 2008
PubMed-ID: 18501599  |  Reference-DOI: 10.1016/J.BMCL.2008.04.044
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INSULIN-LIKE GROWTH FACTOR 1 RECEPTOR
    ChainsA, B, C, D
    EC Number2.7.10.1
    EngineeredYES
    Expression System Vector TypeBACULOVIRUS
    FragmentUNP RESIDUES 981-1286, IGF-1R KINASE DOMAIN
    GeneIGF1R
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymINSULIN-LIKE GROWTH FACTOR I RECEPTOR, IGF-I RECEPTOR, CD221 ANTIGEN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D
Biological Unit 5 (2x)A (2x)B (2x)C (2x)D (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
15754Ligand/Ion(4Z)-6-BROMO-4-({[4-(PYRROLIDIN-1-YLMETHYL)PHENYL]AMINO}METHYLIDENE)ISOQUINOLINE-1,3(2H,4H)-DIONE
2PTR12Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
15751Ligand/Ion(4Z)-6-BROMO-4-({[4-(PYRROLIDIN-1-YLMETHYL)PHENYL]AMINO}METHYLIDENE)ISOQUINOLINE-1,3(2H,4H)-DIONE
2PTR3Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
15751Ligand/Ion(4Z)-6-BROMO-4-({[4-(PYRROLIDIN-1-YLMETHYL)PHENYL]AMINO}METHYLIDENE)ISOQUINOLINE-1,3(2H,4H)-DIONE
2PTR3Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
15751Ligand/Ion(4Z)-6-BROMO-4-({[4-(PYRROLIDIN-1-YLMETHYL)PHENYL]AMINO}METHYLIDENE)ISOQUINOLINE-1,3(2H,4H)-DIONE
2PTR3Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
15751Ligand/Ion(4Z)-6-BROMO-4-({[4-(PYRROLIDIN-1-YLMETHYL)PHENYL]AMINO}METHYLIDENE)ISOQUINOLINE-1,3(2H,4H)-DIONE
2PTR3Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1575-1Ligand/Ion(4Z)-6-BROMO-4-({[4-(PYRROLIDIN-1-YLMETHYL)PHENYL]AMINO}METHYLIDENE)ISOQUINOLINE-1,3(2H,4H)-DIONE
2PTR-1Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:1005 , GLN A:1007 , ALA A:1031 , MET A:1079 , GLU A:1080 , LEU A:1081 , MET A:1082 , THR A:1083 , MET A:1142BINDING SITE FOR RESIDUE 575 A 1
2AC2SOFTWARELEU D:1005 , GLN D:1007 , ALA D:1031 , MET D:1079 , GLU D:1080 , LEU D:1081 , MET D:1082 , THR D:1083 , MET D:1142BINDING SITE FOR RESIDUE 575 D 1
3AC3SOFTWARELEU B:1005 , ALA B:1031 , LYS B:1033 , MET B:1079 , GLU B:1080 , LEU B:1081 , MET B:1082 , THR B:1083 , MET B:1142BINDING SITE FOR RESIDUE 575 B 1
4AC4SOFTWARELEU C:1005 , GLN C:1007 , ALA C:1031 , MET C:1079 , GLU C:1080 , LEU C:1081 , MET C:1082 , THR C:1083 , MET C:1142BINDING SITE FOR RESIDUE 575 C 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZM3)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gln A:1073 -Pro A:1074
2Gln B:1073 -Pro B:1074

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 4)

Asymmetric Unit (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_076249R1256SIGF1R_HUMANDisease (IGF1RES)  ---A/B/C/DR1256S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_076249R1256SIGF1R_HUMANDisease (IGF1RES)  ---AR1256S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_076249R1256SIGF1R_HUMANDisease (IGF1RES)  ---BR1256S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_076249R1256SIGF1R_HUMANDisease (IGF1RES)  ---CR1256S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_076249R1256SIGF1R_HUMANDisease (IGF1RES)  ---DR1256S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 5 (1, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_076249R1256SIGF1R_HUMANDisease (IGF1RES)  ---A/B/C/DR1256S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 12)

Asymmetric Unit (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.IGF1R_HUMAN1005-1033
 
 
 
  4A:1005-1033
B:1005-1033
C:1005-1033
D:1005-1033
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.IGF1R_HUMAN1131-1143
 
 
 
  4A:1131-1143
B:1131-1143
C:1131-1143
D:1131-1143
3RECEPTOR_TYR_KIN_IIPS00239 Receptor tyrosine kinase class II signature.IGF1R_HUMAN1159-1167
 
 
 
  4A:1159-1167
B:1159-1167
C:1159-1167
D:1159-1167
Biological Unit 1 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.IGF1R_HUMAN1005-1033
 
 
 
  1A:1005-1033
-
-
-
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.IGF1R_HUMAN1131-1143
 
 
 
  1A:1131-1143
-
-
-
3RECEPTOR_TYR_KIN_IIPS00239 Receptor tyrosine kinase class II signature.IGF1R_HUMAN1159-1167
 
 
 
  1A:1159-1167
-
-
-
Biological Unit 2 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.IGF1R_HUMAN1005-1033
 
 
 
  1-
B:1005-1033
-
-
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.IGF1R_HUMAN1131-1143
 
 
 
  1-
B:1131-1143
-
-
3RECEPTOR_TYR_KIN_IIPS00239 Receptor tyrosine kinase class II signature.IGF1R_HUMAN1159-1167
 
 
 
  1-
B:1159-1167
-
-
Biological Unit 3 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.IGF1R_HUMAN1005-1033
 
 
 
  1-
-
C:1005-1033
-
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.IGF1R_HUMAN1131-1143
 
 
 
  1-
-
C:1131-1143
-
3RECEPTOR_TYR_KIN_IIPS00239 Receptor tyrosine kinase class II signature.IGF1R_HUMAN1159-1167
 
 
 
  1-
-
C:1159-1167
-
Biological Unit 4 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.IGF1R_HUMAN1005-1033
 
 
 
  1-
-
-
D:1005-1033
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.IGF1R_HUMAN1131-1143
 
 
 
  1-
-
-
D:1131-1143
3RECEPTOR_TYR_KIN_IIPS00239 Receptor tyrosine kinase class II signature.IGF1R_HUMAN1159-1167
 
 
 
  1-
-
-
D:1159-1167
Biological Unit 5 (3, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.IGF1R_HUMAN1005-1033
 
 
 
  8A:1005-1033
B:1005-1033
C:1005-1033
D:1005-1033
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.IGF1R_HUMAN1131-1143
 
 
 
  8A:1131-1143
B:1131-1143
C:1131-1143
D:1131-1143
3RECEPTOR_TYR_KIN_IIPS00239 Receptor tyrosine kinase class II signature.IGF1R_HUMAN1159-1167
 
 
 
  8A:1159-1167
B:1159-1167
C:1159-1167
D:1159-1167

(-) Exons   (7, 28)

Asymmetric Unit (7, 28)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002680351aENSE00001618814chr15:99192200-99192904705IGF1R_HUMAN1-32320--
1.2ENST000002680352ENSE00000943091chr15:99250791-99251336546IGF1R_HUMAN32-2141830--
1.3ENST000002680353ENSE00001320137chr15:99434554-99434866313IGF1R_HUMAN214-3181050--
1.4ENST000002680354ENSE00001129109chr15:99439986-99440134149IGF1R_HUMAN318-368510--
1.5ENST000002680355ENSE00001301974chr15:99442706-99442850145IGF1R_HUMAN368-416490--
1.6ENST000002680356ENSE00001129094chr15:99451914-99452128215IGF1R_HUMAN416-488730--
1.7ENST000002680357ENSE00001129087chr15:99454544-99454670127IGF1R_HUMAN488-530430--
1.8ENST000002680358ENSE00001129080chr15:99456273-99456511239IGF1R_HUMAN530-610810--
1.9ENST000002680359ENSE00001129073chr15:99459193-99459360168IGF1R_HUMAN610-666570--
1.10ENST0000026803510ENSE00001129062chr15:99459901-99460105205IGF1R_HUMAN666-734690--
1.11ENST0000026803511ENSE00001129055chr15:99465377-99465660284IGF1R_HUMAN734-829960--
1.12ENST0000026803512ENSE00001129044chr15:99467105-99467241137IGF1R_HUMAN829-874460--
1.13ENST0000026803513ENSE00001311160chr15:99467754-99467913160IGF1R_HUMAN875-928540--
1.14aENST0000026803514aENSE00001318374chr15:99472787-99472889103IGF1R_HUMAN928-962350--
1.15ENST0000026803515ENSE00001297944chr15:99473464-9947353471IGF1R_HUMAN962-986254A:980-986
B:980-986
C:980-986
D:980-986
7
7
7
7
1.16ENST0000026803516ENSE00001129013chr15:99478053-99478282230IGF1R_HUMAN986-1062774A:986-1062
B:986-1062
C:986-1062
D:986-1062
77
77
77
77
1.17ENST0000026803517ENSE00001129006chr15:99478545-99478655111IGF1R_HUMAN1063-1099374A:1063-1097
B:1063-1097
C:1063-1096
D:1063-1096
35
35
34
34
1.18ENST0000026803518ENSE00001319679chr15:99482430-99482589160IGF1R_HUMAN1100-1153544A:1101-1153
B:1105-1153
C:1104-1153
D:1107-1153
53
49
50
47
1.19ENST0000026803519ENSE00001597369chr15:99486152-99486281130IGF1R_HUMAN1153-1196444A:1153-1196
B:1153-1196
C:1153-1196
D:1153-1196
44
44
44
44
1.20ENST0000026803520ENSE00001128979chr15:99491803-99491937135IGF1R_HUMAN1196-1241464A:1196-1241
B:1196-1241
C:1196-1241
D:1196-1241
46
46
46
46
1.21bENST0000026803521bENSE00001316091chr15:99500290-995077597470IGF1R_HUMAN1241-13671274A:1241-1285
B:1241-1285
C:1241-1285
D:1241-1285
45
45
45
45

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:303
 aligned with IGF1R_HUMAN | P08069 from UniProtKB/Swiss-Prot  Length:1367

    Alignment length:306
                                   989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      
         IGF1R_HUMAN    980 YFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEEN 1285
               SCOP domains d2zm3a_ A: Insulin-like growth factor 1 receptor                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2zm3A01 A:980-1078 Phosphorylase Kinase; domain 1                                                  2zm3A02 A:1079-1279    Transferase(Phosphotransferase) domain 1                                                                                                                                          ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh........hhh.eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeee.....eeeeee.....hhhhhhhh....---.......hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------- SAPs(SNPs)
                    PROSITE -------------------------PROTEIN_KINASE_ATP           -------------------------------------------------------------------------------------------------PROTEIN_KINAS---------------RECEPTOR_---------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.15   ----------------------------------------------------------------------------Exon 1.17  PDB: A:1063-1097          Exon 1.18  PDB: A:1101-1153 UniProt: 1100-1153        ------------------------------------------Exon 1.20  PDB: A:1196-1241 UniProt: 1196-1241-------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------Exon 1.16  PDB: A:986-1062 UniProt: 986-1062                                 ------------------------------------------------------------------------------------------Exon 1.19  PDB: A:1153-1196                 --------------------------------------------Exon 1.21b  PDB: A:1241-1285 [INCOMPLETE]     Transcript 1 (2)
                2zm3 A  980 SFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPE---NPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIyETDyyRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEEN 1285
                                   989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089       | - |    1109      1119      1129      1139      1149      1159 |   |1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      
                                                                                                                                              1097   |                                                        1161-PTR|                                                                                                                       
                                                                                                                                                  1101                                                            1165-PTR                                                                                                                    
                                                                                                                                                                                                                   1166-PTR                                                                                                                   

Chain B from PDB  Type:PROTEIN  Length:299
 aligned with IGF1R_HUMAN | P08069 from UniProtKB/Swiss-Prot  Length:1367

    Alignment length:306
                                   989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      
         IGF1R_HUMAN    980 YFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEEN 1285
               SCOP domains d2zm3b_ B: Insulin-like growth factor 1 receptor                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2zm3B01 B:980-1078 Phosphorylase Kinase; domain 1                                                  2zm3B02 B:1079-1279        Transferase(Phosphotransferase) domain 1                                                                                                                                      ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh..hhhhh.hhh.eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee....hhhhhhhhhhhhhhhh.........eeeee.....eeeeee.....hhhhhhhhh...-------...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------- SAPs(SNPs)
                    PROSITE -------------------------PROTEIN_KINASE_ATP           -------------------------------------------------------------------------------------------------PROTEIN_KINAS---------------RECEPTOR_---------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.15   ----------------------------------------------------------------------------Exon 1.17  PDB: B:1063-1097          Exon 1.18  PDB: B:1105-1153 UniProt: 1100-1153        ------------------------------------------Exon 1.20  PDB: B:1196-1241 UniProt: 1196-1241-------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------Exon 1.16  PDB: B:986-1062 UniProt: 986-1062                                 ------------------------------------------------------------------------------------------Exon 1.19  PDB: B:1153-1196                 --------------------------------------------Exon 1.21b  PDB: B:1241-1285 [INCOMPLETE]     Transcript 1 (2)
                2zm3 B  980 SFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPE-------APPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIyETDyyRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEEN 1285
                                   989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089       | -     |1109      1119      1129      1139      1149      1159 |   |1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      
                                                                                                                                              1097    1105                                                    1161-PTR|                                                                                                                       
                                                                                                                                                                                                                  1165-PTR                                                                                                                    
                                                                                                                                                                                                                   1166-PTR                                                                                                                   

Chain C from PDB  Type:PROTEIN  Length:299
 aligned with IGF1R_HUMAN | P08069 from UniProtKB/Swiss-Prot  Length:1367

    Alignment length:306
                                   989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      
         IGF1R_HUMAN    980 YFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEEN 1285
               SCOP domains d2zm3c_ C: Insulin-like growth factor 1 receptor                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2zm3C01 C:980-1078 Phosphorylase Kinase; domain 1                                                  2zm3C02 C:1079-127       9 Transferase(Phosphotransferase) domain 1                                                                                                                                      ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh.......hhh.eeeeeeeee....eeeeeeee.......eeeeeeee.....hhhhhhhhhhhhhhhh.........eeeee......eeeee.....hhhhhhhhh..-------....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------- SAPs(SNPs)
                    PROSITE -------------------------PROTEIN_KINASE_ATP           -------------------------------------------------------------------------------------------------PROTEIN_KINAS---------------RECEPTOR_---------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.15   ----------------------------------------------------------------------------Exon 1.17  PDB: C:1063-1096          Exon 1.18  PDB: C:1104-1153 UniProt: 1100-1153        ------------------------------------------Exon 1.20  PDB: C:1196-1241 UniProt: 1196-1241-------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------Exon 1.16  PDB: C:986-1062 UniProt: 986-1062                                 ------------------------------------------------------------------------------------------Exon 1.19  PDB: C:1153-1196                 --------------------------------------------Exon 1.21b  PDB: C:1241-1285 [INCOMPLETE]     Transcript 1 (2)
                2zm3 C  980 SFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRP-------LAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIyETDyyRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEEN 1285
                                   989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      |  -    | 1109      1119      1129      1139      1149      1159 |   |1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      
                                                                                                                                             1096    1104                                                     1161-PTR|                                                                                                                       
                                                                                                                                                                                                                  1165-PTR                                                                                                                    
                                                                                                                                                                                                                   1166-PTR                                                                                                                   

Chain D from PDB  Type:PROTEIN  Length:296
 aligned with IGF1R_HUMAN | P08069 from UniProtKB/Swiss-Prot  Length:1367

    Alignment length:306
                                   989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      
         IGF1R_HUMAN    980 YFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEEN 1285
               SCOP domains d2zm3d_ D: Insulin-like growth factor 1 receptor                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2zm3D01 D:980-1078 Phosphorylase Kinase; domain 1                                                  2zm3D02 D:1079-127          9 Transferase(Phosphotransferase) domain 1                                                                                                                                   ------ CATH domains
           Pfam domains (1) -------------------Pkinase_Tyr-2zm3D01 D:999-1266                                                                                                                                                                                                                                              ------------------- Pfam domains (1)
           Pfam domains (2) -------------------Pkinase_Tyr-2zm3D02 D:999-1266                                                                                                                                                                                                                                              ------------------- Pfam domains (2)
           Pfam domains (3) -------------------Pkinase_Tyr-2zm3D03 D:999-1266                                                                                                                                                                                                                                              ------------------- Pfam domains (3)
           Pfam domains (4) -------------------Pkinase_Tyr-2zm3D04 D:999-1266                                                                                                                                                                                                                                              ------------------- Pfam domains (4)
         Sec.struct. author ..hhhhh..hhhhh.hhh.eeeeeeeee....eeeeeeee.......eeeeeeeee....hhhhhhhhhhhhhhhhh........eeeee.....eeeeee.....hhhhhhhhh..----------.hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------- SAPs(SNPs)
                    PROSITE -------------------------PROTEIN_KINASE_ATP           -------------------------------------------------------------------------------------------------PROTEIN_KINAS---------------RECEPTOR_---------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.15   ----------------------------------------------------------------------------Exon 1.17  PDB: D:1063-1096          Exon 1.18  PDB: D:1107-1153 UniProt: 1100-1153        ------------------------------------------Exon 1.20  PDB: D:1196-1241 UniProt: 1196-1241-------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------Exon 1.16  PDB: D:986-1062 UniProt: 986-1062                                 ------------------------------------------------------------------------------------------Exon 1.19  PDB: D:1153-1196                 --------------------------------------------Exon 1.21b  PDB: D:1241-1285 [INCOMPLETE]     Transcript 1 (2)
                2zm3 D  980 SFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRP----------PSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIyETDyyRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEEN 1285
                                   989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      |  -      1109      1119      1129      1139      1149      1159 |   |1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      
                                                                                                                                             1096       1107                                                  1161-PTR|                                                                                                                       
                                                                                                                                                                                                                  1165-PTR                                                                                                                    
                                                                                                                                                                                                                   1166-PTR                                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: PKinase (934)

(-) Gene Ontology  (41, 41)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (IGF1R_HUMAN | P08069)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0043559    insulin binding    Interacting selectively and non-covalently with insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
    GO:0005158    insulin receptor binding    Interacting selectively and non-covalently with the insulin receptor.
    GO:0043560    insulin receptor substrate binding    Interacting selectively and non-covalently with any of the insulin receptor substrate (IRS) proteins, adaptor proteins that bind to the transphosphorylated insulin and insulin-like growth factor receptors, are themselves phosphorylated and in turn recruit SH2 domain-containing signaling molecules to form a productive signaling complex.
    GO:0031994    insulin-like growth factor I binding    Interacting selectively and non-covalently with insulin-like growth factor I.
    GO:0005520    insulin-like growth factor binding    Interacting selectively and non-covalently with an insulin-like growth factor, any member of a group of polypeptides that are structurally homologous to insulin and share many of its biological activities, but are immunologically distinct from it.
    GO:0005010    insulin-like growth factor-activated receptor activity    Combining with insulin-like growth factor and transmitting the signal across the plasma membrane to initiate a change in cell activity.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0043548    phosphatidylinositol 3-kinase binding    Interacting selectively and non-covalently with a phosphatidylinositol 3-kinase, any enzyme that catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0004714    transmembrane receptor protein tyrosine kinase activity    Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate.
biological process
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0051389    inactivation of MAPKK activity    Any process that terminates the activity of the active enzyme MAP kinase kinase (MAPKK).
    GO:0008286    insulin receptor signaling pathway    The series of molecular signals generated as a consequence of the insulin receptor binding to insulin.
    GO:0048009    insulin-like growth factor receptor signaling pathway    The series of molecular signals generated as a consequence of the insulin-like growth factor receptor binding to one of its physiological ligands.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0038083    peptidyl-tyrosine autophosphorylation    The phosphorylation by a protein of one or more of its own tyrosine amino acid residues, or a tyrosine residue on an identical protein.
    GO:0014065    phosphatidylinositol 3-kinase signaling    A series of reactions within the signal-receiving cell, mediated by the intracellular phosphatidylinositol 3-kinase (PI3K). Many cell surface receptor linked signaling pathways signal through PI3K to regulate numerous cellular functions.
    GO:0048015    phosphatidylinositol-mediated signaling    A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0045740    positive regulation of DNA replication    Any process that activates or increases the frequency, rate or extent of DNA replication.
    GO:0030335    positive regulation of cell migration    Any process that activates or increases the frequency, rate or extent of cell migration.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0046777    protein autophosphorylation    The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0051262    protein tetramerization    The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
    GO:0046328    regulation of JNK cascade    Any process that modulates the frequency, rate or extent of signal transduction mediated by the JNK cascade.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007169    transmembrane receptor protein tyrosine kinase signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0035867    alphav-beta3 integrin-IGF-1-IGF1R complex    A protein complex that consists of an alphav-beta3 integrin complex bound to insulin-like growth factor-1 (IGF-1) and type I insulin-like growth factor receptor (IGF1R). IGF1R is a heterotetramer that consists of two alpha-subunits and two beta-subunits.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043235    receptor complex    Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IGF1R_HUMAN | P080691igr 1jqh 1k3a 1m7n 1p4o 2oj9 3d94 3f5p 3i81 3lvp 3lw0 3nw5 3nw6 3nw7 3o23 3qqu 4d2r 4xss 5fxq 5fxr 5fxs 5hzn

(-) Related Entries Specified in the PDB File

1jqh