3TGQ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF UNLIGANDED HIV-1 CLADE B STRAIN YU2 GP120 CORE

Authors :   Y. D. Kwon, P. D. Kwong

Date :   17 Aug 11 (Deposition) - 04 Apr 12 (Release) - 02 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A,C  (1x)
Biol. Unit 6: B (1x),D (1x)

Keywords :   Hiv-1 Gp120, Unliganded Structure, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. D. Kwon, A. Finzi, X. Wu, C. Dogo-Isonagie, L. K. Lee, L. R. Moore, S. D. Schmidt, J. Stuckey, Y. Yang, T. Zhou, J. Zhu, D. A. Vicic, A. K. Debnath, L. Shapiro, C. A. Bewley, J. R. Mascola, J. G. Sodroski, P. D. Kwong
Unliganded Hiv-1 Gp120 Core Structures Assume The Cd4-Bound Conformation With Regulation By Quaternary Interactions And Variable Loops.
Proc. Natl. Acad. Sci. Usa V. 109 5663 2012
PubMed-ID: 22451932 | Reference-DOI: 10.1073/PNAS.1112391109

Molecule 1 - HIV-1 YU2 GP120
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK 293
	Expression System Plasmid	:	PVRC8400
	Expression System Taxid	:	9606
	Expression System Vector Type	:	PLASMID
	Gene	:	HIV-1 ENV
	Organism Common	:	HIV-1
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS 1
	Organism Taxid	:	11676

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A		C
Biological Unit 6 (1x)	:		B (1x)		D (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 25)

No.	Name	Count	Type	Full Name
1	NAG	25	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (1, 9)

No.	Name	Count	Type	Full Name
1	NAG	9	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (1, 6)

No.	Name	Count	Type	Full Name
1	NAG	6	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 3 (1, 6)

No.	Name	Count	Type	Full Name
1	NAG	6	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 4 (1, 4)

No.	Name	Count	Type	Full Name
1	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 5 (1, 15)

No.	Name	Count	Type	Full Name
1	NAG	15	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 6 (1, 6)

No.	Name	Count	Type	Full Name
1	NAG	6	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:231 , ASN A:241	BINDING SITE FOR RESIDUE NAG A 501
02	AC2	SOFTWARE	GLU A:211 , PRO A:212 , LEU A:261 , ASN A:262 , CYS A:445 , SER A:446 , SER A:447	BINDING SITE FOR RESIDUE NAG A 502
03	AC3	SOFTWARE	ASN A:276 , THR A:278 , ASN A:279 , THR D:297 , HIS D:330 , ARG D:444	BINDING SITE FOR RESIDUE NAG A 503
04	AC4	SOFTWARE	GLU A:267 , GLU A:268 , ILE A:270 , ASN A:289 , GLN A:344	BINDING SITE FOR RESIDUE NAG A 504
05	AC5	SOFTWARE	ASN A:295 , LEU A:333 , ASN A:413 , ARG A:444	BINDING SITE FOR RESIDUE NAG A 505
06	AC6	SOFTWARE	ASN A:356	BINDING SITE FOR RESIDUE NAG A 506
07	AC7	SOFTWARE	ASN A:386 , THR A:388 , NAG C:506	BINDING SITE FOR RESIDUE NAG A 507
08	AC8	SOFTWARE	ASN A:394 , THR A:396	BINDING SITE FOR RESIDUE NAG A 508
09	AC9	SOFTWARE	VAL A:293 , ASN A:448	BINDING SITE FOR RESIDUE NAG A 509
10	BC1	SOFTWARE	GLU B:211 , PRO B:212 , VAL B:254 , LEU B:261 , ASN B:262 , CYS B:445 , SER B:446 , SER B:447	BINDING SITE FOR RESIDUE NAG B 501
11	BC2	SOFTWARE	ASN B:276 , THR B:278 , ASN C:295 , THR C:297 , HIS C:330 , ARG C:444 , NAG C:505	BINDING SITE FOR RESIDUE NAG B 502
12	BC3	SOFTWARE	GLU B:268 , ASN B:289 , GLU B:290 , GLN B:344	BINDING SITE FOR RESIDUE NAG B 503
13	BC4	SOFTWARE	ASN B:295 , ARG B:444	BINDING SITE FOR RESIDUE NAG B 504
14	BC5	SOFTWARE	ASN B:386 , THR B:388 , GLN B:389 , NAG D:503	BINDING SITE FOR RESIDUE NAG B 505
15	BC6	SOFTWARE	ASN A:300 , GLN A:442 , ASN B:448	BINDING SITE FOR RESIDUE NAG B 506
16	BC7	SOFTWARE	ASN C:234 , THR C:236 , SER C:274	BINDING SITE FOR RESIDUE NAG C 501
17	BC8	SOFTWARE	GLU C:211 , PRO C:212 , VAL C:254 , ASN C:262 , CYS C:445 , SER C:447	BINDING SITE FOR RESIDUE NAG C 502
18	BC9	SOFTWARE	ASN C:276 , THR C:278 , ASN C:279	BINDING SITE FOR RESIDUE NAG C 503
19	CC1	SOFTWARE	GLU C:268 , GLU C:269 , ASN C:289 , GLU C:290 , GLN C:344 , GLU D:290	BINDING SITE FOR RESIDUE NAG C 504
20	CC2	SOFTWARE	NAG B:502 , ASN C:295 , ARG C:444	BINDING SITE FOR RESIDUE NAG C 505
21	CC3	SOFTWARE	NAG A:507 , ASN C:386 , THR C:388	BINDING SITE FOR RESIDUE NAG C 506
22	CC4	SOFTWARE	GLU D:211 , ASN D:262 , CYS D:445 , SER D:447 , NAG D:504	BINDING SITE FOR RESIDUE NAG D 501
23	CC5	SOFTWARE	ASN D:295 , HOH D:621	BINDING SITE FOR RESIDUE NAG D 502
24	CC6	SOFTWARE	NAG B:505 , ASN D:386 , THR D:388	BINDING SITE FOR RESIDUE NAG D 503
25	CC7	SOFTWARE	SER D:446 , ASN D:448 , NAG D:501	BINDING SITE FOR RESIDUE NAG D 504

Asymmetric Unit

No.	Residues
1	A:54	-	A:74
2	A:119	-	A:205
3	A:218	-	A:247
4	A:228	-	A:239
5	A:296	-	A:331
6	A:378	-	A:445
7	A:385	-	A:418
8	B:54	-	B:74
9	B:119	-	B:205
10	B:218	-	B:247
11	B:228	-	B:239
12	B:296	-	B:331
13	B:378	-	B:445
14	B:385	-	B:418
15	C:54	-	C:74
16	C:119	-	C:205
17	C:218	-	C:247
18	C:228	-	C:239
19	C:296	-	C:331
20	C:378	-	C:445
21	C:385	-	C:418
22	D:54	-	D:74
23	D:119	-	D:205
24	D:218	-	D:247
25	D:228	-	D:239
26	D:296	-	D:331
27	D:378	-	D:445
28	D:385	-	D:418

(no "Cis Peptide Bond" information available for 3TGQ)

(no "SAP(SNP)/Variant" information available for 3TGQ)

(no "PROSITE Motif" information available for 3TGQ)

(no "Exon" information available for 3TGQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:336
 aligned with ENV_HV1Y2 | P35961 from UniProtKB/Swiss-Prot  Length:843

    Alignment length:436
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      
            ENV_HV1Y2    44 WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTTSSSWETMEKGEIKNCSFNITTSIRDKVQKEYALFYNLDVVPIDNASYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNNTRKSINIGPGRALYTTGEIIGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE 479
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeee.......hhhhhhhhhheee.......ee.....eeee.hhhhhhhhhhhhhhhhhhhhh...eeee.----------------------------------------------------------------------.eeee............eeee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee...---------------------....eeeeeeehhhhhhhhhhhhhhh........eeee......hhhhhheeeee..eeeee...........------..eeeeeee...eee.....eeee........eeeeeeeeeeeeee...---..eeeeee...hhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tgq A  45 WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTG----------------------------------------------------------------------GSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNN---------------------GDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDT------GRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGG---NGTEIFRPGGGDMRDNWRSELYKYKVVKIE 492
                                    54        64        74        84        94       104       114       124         -         -         -         -         -         -         -|      207       217       227       237       247       257       267       277       287       297   |     -         -     | 328       338       348       358       368       378       388       | -    |  416       426       436       446       456  |   |466       476       486      
                                                                                                         124                                                                    198                                                                                                    301                   324                                                                     396    411                                             459 463

Chain B from PDB  Type:PROTEIN  Length:336
 aligned with ENV_HV1Y2 | P35961 from UniProtKB/Swiss-Prot  Length:843

    Alignment length:436
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      
            ENV_HV1Y2    44 WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTTSSSWETMEKGEIKNCSFNITTSIRDKVQKEYALFYNLDVVPIDNASYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNNTRKSINIGPGRALYTTGEIIGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE 479
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeee.......hhhhhhhhhheee.......ee.....eeee.hhhhhhhhhhhhhhhhhhhhh...eeee.----------------------------------------------------------------------.eeee............eeee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee...---------------------....eeeeeeehhhhhhhhhhhhhhh........eeee......hhhhhheeeee..eeeee...........------..eeeeeee...eee.....eeee........eeeeeeeeeeeeee...---..eeeeee....hhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tgq B  45 WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTG----------------------------------------------------------------------GSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNN---------------------GDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDT------GRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGG---NGTEIFRPGGGDMRDNWRSELYKYKVVKIE 492
                                    54        64        74        84        94       104       114       124         -         -         -         -         -         -         -|      207       217       227       237       247       257       267       277       287       297   |     -         -     | 328       338       348       358       368       378       388       | -    |  416       426       436       446       456  |   |466       476       486      
                                                                                                         124                                                                    198                                                                                                    301                   324                                                                     396    411                                             459 463

Chain C from PDB  Type:PROTEIN  Length:336
 aligned with ENV_HV1Y2 | P35961 from UniProtKB/Swiss-Prot  Length:843

    Alignment length:436
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      
            ENV_HV1Y2    44 WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTTSSSWETMEKGEIKNCSFNITTSIRDKVQKEYALFYNLDVVPIDNASYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNNTRKSINIGPGRALYTTGEIIGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE 479
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeee.......hhhhhhhhhheee.......ee.....eeee.hhhhhhhhhhhhhhhhhhhhh...eeee.----------------------------------------------------------------------.eeee............eeee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee...---------------------....eeeeeeehhhhhhhhhhhhhhh........eeee......hhhhhheeeee..eeeee...........------..eeeeeee...eee.....eeee........eeeeeeeeeeeeee...---..eeeeee...hhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tgq C  45 WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTG----------------------------------------------------------------------GSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNN---------------------GDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDT------GRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGG---NGTEIFRPGGGDMRDNWRSELYKYKVVKIE 492
                                    54        64        74        84        94       104       114       124         -         -         -         -         -         -         -|      207       217       227       237       247       257       267       277       287       297   |     -         -     | 328       338       348       358       368       378       388       | -    |  416       426       436       446       456  |   |466       476       486      
                                                                                                         124                                                                    198                                                                                                    301                   324                                                                     396    411                                             459 463

Chain D from PDB  Type:PROTEIN  Length:336
 aligned with ENV_HV1Y2 | P35961 from UniProtKB/Swiss-Prot  Length:843

    Alignment length:436
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473      
            ENV_HV1Y2    44 WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTTSSSWETMEKGEIKNCSFNITTSIRDKVQKEYALFYNLDVVPIDNASYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNNTRKSINIGPGRALYTTGEIIGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE 479
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeee.......hhhhhhhhhheee.......ee.....eeee.hhhhhhhhhhhhhhhhhhhhh...eeee.----------------------------------------------------------------------.eeee............eeee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee...---------------------....eeeeeeehhhhhhhhhhhhhhh........eeee......hhhhhheeeee..eeeee...........------..eeeeeee...eee.....eeee........eeeeeeeeeeeeee...---..eeeeee...hhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tgq D  45 WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTG----------------------------------------------------------------------GSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNN---------------------GDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDT------GRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGG---NGTEIFRPGGGDMRDNWRSELYKYKVVKIE 492
                                    54        64        74        84        94       104       114       124         -         -         -         -         -         -         -|      207       217       227       237       247       257       267       277       287       297   |     -         -     | 328       338       348       358       368       378       388       | -    |  416       426       436       446       456  |   |466       476       486      
                                                                                                         124                                                                    198                                                                                                    301                   324                                                                     396    411                                             459 463

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3TGQ)

(no "CATH Domain" information available for 3TGQ)

(no "Pfam Domain" information available for 3TGQ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ENV_HV1Y2 | P35961)

molecular function
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
	GO:0075512	clathrin-dependent endocytosis of virus by host cell	Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
	GO:0075509	endocytosis involved in viral entry into host cell	Any endocytosis that is involved in the uptake of a virus into a host cell.
	GO:0030683	evasion or tolerance by virus of host immune response	Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0039654	fusion of virus membrane with host endosome membrane	Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
	GO:0019064	fusion of virus membrane with host plasma membrane	Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
	GO:0039663	membrane fusion involved in viral entry into host cell	Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
	GO:0002223	stimulatory C-type lectin receptor signaling pathway	Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019082	viral protein processing	Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a viral protein.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0044174	host cell endosome	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.
	GO:0044175	host cell endosome membrane	The lipid bilayer surrounding a host cell endosome.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019031	viral envelope	The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3tgq)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]

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Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

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	3tgq
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 25)

Sites (25, 25)

SS Bonds (28, 28)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (21, 21)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File