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(-) Description

Title :  STRUCTURE OF HIV-1 GP120 (CORE WITH V3) IN COMPLEX WITH CD4-BINDING-SITE ANTIBODY F105
 
Authors :  Y. D. Kwon, L. Chen, T. Zhou, X. Wu, S. O'Dell, L. Cavacini, A. J. Hessell, M. Pancera, M. Tang, L. Xu, Z. Yang, M. -Y. Zhang, J. Arthos, D. R. Burton D. Dimitrov, G. J. Nabel, M. Posner, J. Sodroski, R. Wyatt, J. R. Mascol P. D. Kwong
Date :  18 May 09  (Deposition) - 17 Nov 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,G,H,J,L
Keywords :  Hiv, Gp120, Cd4 Binding Site Antibody, F105, Immune Evasion, Aids, Apoptosis, Cell Membrane, Cleavage On Pair Of Basic Residues, Disulfide Bond, Envelope Protein, Fusion Protein, Glycoprotein, Host-Virus Interaction, Lipoprotein, Membrane, Palmitate, Transmembrane, Viral Immunoevasion, Virion, Structural Protein- Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Chen, Y. Do Kwon, T. Zhou, X. Wu, S. O'Dell, L. Cavacini, A. J. Hessell, M. Pancera, M. Tang, L. Xu, Z. Y. Yang, M. Y. Zhang, J. Arthos, D. R. Burton, D. S. Dimitrov, G. J. Nabel, M. R. Posner, J. Sodroski, R. Wyatt, J. R. Mascola, P. D. Kwong
Structural Basis Of Immune Evasion At The Site Of Cd4 Attachment On Hiv-1 Gp120.
Science V. 326 1123 2009
PubMed-ID: 19965434  |  Reference-DOI: 10.1126/SCIENCE.1175868

(-) Compounds

Molecule 1 - GLYCOPROTEIN 120
    Chains: G, J
    Engineered: YES
    Expression System: ADENOVIRUS
    Expression System Cell: KIDNEY EMBRYONIC CELL LINE 293
    Expression System Plasmid: PSHUTTLE-CMV
    Expression System Strain: AD5
    Expression System Taxid: 10535
    Expression System Vector Type: PLASMID
    Gene: ENV
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
    Organism Taxid: 362651
    Strain: YU-2
    Synonym: GP120, SU
 
Molecule 2 - F105 LIGHT CHAIN
    Chains: L, A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: PRODUCED BY FUSION OF ANTIBODY-PRODUCING EPSTEIN BARR VIURS-TRANSFORMED CELLS WITH THE HMMA2.11TG/O CELL LINE
 
Molecule 3 - F105 HEAVY CHAIN
    Chains: H, B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: PRODUCED BY FUSION OF ANTIBODY-PRODUCING EPSTEIN BARR VIURS-TRANSFORMED CELLS WITH THE HMMA2.11TG/O CELL LINE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABGHJL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 27)

Asymmetric/Biological Unit (1, 27)
No.NameCountTypeFull Name
1NAG27Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN G:234 , THR G:236 , PRO G:238BINDING SITE FOR RESIDUE NAG G 734
02AC2SOFTWARELYS G:231 , THR G:240 , ASN G:241BINDING SITE FOR RESIDUE NAG G 741
03AC3SOFTWAREPRO G:212 , ASN G:262 , CYS G:445 , SER G:446 , SER G:447BINDING SITE FOR RESIDUE NAG G 762
04AC4SOFTWAREASN G:276 , THR G:278 , ASN G:279BINDING SITE FOR RESIDUE NAG G 776
05AC5SOFTWAREGLU G:268 , GLU G:269 , ILE G:270 , ASN G:289 , GLU G:290 , GLN G:344 , LYS G:348BINDING SITE FOR RESIDUE NAG G 789
06AC6SOFTWAREHOH G:53 , ASN G:295 , NAG G:832BINDING SITE FOR RESIDUE NAG G 795
07AC7SOFTWAREARG G:298 , ASN G:300 , ASN G:301 , GLN G:422BINDING SITE FOR RESIDUE NAG G 801
08AC8SOFTWAREHIS G:330 , ASN G:332 , NAG G:795BINDING SITE FOR RESIDUE NAG G 832
09AC9SOFTWAREASN G:356 , LYS G:357 , GLY G:464BINDING SITE FOR RESIDUE NAG G 856
10BC1SOFTWAREASN G:386 , THR G:388BINDING SITE FOR RESIDUE NAG G 886
11BC2SOFTWAREASN G:394 , ASP G:395BINDING SITE FOR RESIDUE NAG G 894
12BC3SOFTWARELEU G:265 , ASN G:448BINDING SITE FOR RESIDUE NAG G 948
13BC4SOFTWAREASN G:463BINDING SITE FOR RESIDUE NAG G 963
14BC5SOFTWAREASN J:234 , THR J:236 , PRO J:238BINDING SITE FOR RESIDUE NAG J 734
15BC6SOFTWAREASN J:241BINDING SITE FOR RESIDUE NAG J 741
16BC7SOFTWAREPRO J:212 , VAL J:254 , ASN J:262 , ARG J:444 , CYS J:445 , SER J:446 , SER J:447 , NAG J:948BINDING SITE FOR RESIDUE NAG J 762
17BC8SOFTWAREASN J:276 , THR J:278 , ASN J:279BINDING SITE FOR RESIDUE NAG J 776
18BC9SOFTWAREGLU J:268 , GLU J:269 , ILE J:270 , ASN J:289 , GLN J:344BINDING SITE FOR RESIDUE NAG J 789
19CC1SOFTWAREASN J:295 , NAG J:913BINDING SITE FOR RESIDUE NAG J 795
20CC2SOFTWAREPRO J:299 , ASN J:301BINDING SITE FOR RESIDUE NAG J 801
21CC3SOFTWAREASN J:295 , ARG J:327 , ASN J:332 , THR J:415 , NAG J:913BINDING SITE FOR RESIDUE NAG J 832
22CC4SOFTWAREASN J:356BINDING SITE FOR RESIDUE NAG J 856
23CC5SOFTWAREASN J:386 , THR J:388BINDING SITE FOR RESIDUE NAG J 886
24CC6SOFTWAREASN J:394BINDING SITE FOR RESIDUE NAG J 894
25CC7SOFTWAREARG J:412 , ASN J:413 , NAG J:795 , NAG J:832BINDING SITE FOR RESIDUE NAG J 913
26CC8SOFTWARESER J:446 , SER J:447 , ASN J:448 , NAG J:762BINDING SITE FOR RESIDUE NAG J 948
27CC9SOFTWARETHR J:462 , ASN J:463BINDING SITE FOR RESIDUE NAG J 963

(-) SS Bonds  (20, 20)

Asymmetric/Biological Unit
No.Residues
1A:23 -A:88
2A:134 -A:194
3B:22 -B:92
4B:140 -B:196
5G:119 -G:205
6G:218 -G:247
7G:228 -G:239
8G:296 -G:331
9G:378 -G:445
10G:385 -G:418
11H:22 -H:92
12H:140 -H:196
13J:119 -J:205
14J:218 -J:247
15J:228 -J:239
16J:296 -J:331
17J:378 -J:445
18J:385 -J:418
19L:23 -L:88
20L:134 -L:194

(-) Cis Peptide Bonds  (11, 11)

Asymmetric/Biological Unit
No.Residues
1Asn G:425 -Met G:426
2Tyr L:140 -Pro L:141
3Gly H:95 -Pro H:96
4Phe H:146 -Pro H:147
5Glu H:148 -Pro H:149
6Arg J:440 -Gly J:441
7Gly J:441 -Gln J:442
8Tyr A:140 -Pro A:141
9Gly B:95 -Pro B:96
10Phe B:146 -Pro B:147
11Glu B:148 -Pro B:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HI1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HI1)

(-) Exons   (0, 0)

(no "Exon" information available for 3HI1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
 aligned with Q6PIL8_HUMAN | Q6PIL8 from UniProtKB/TrEMBL  Length:236

    Alignment length:216
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230      
        Q6PIL8_HUMAN     21 ENVLTQSPGTLSLSPGERATLSCRASQSLSSSYLAWYQQKPGQAPRLLIYGVSSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGTSRPITFGQGTRLDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC  236
               SCOP domains d3hi1a1 A:1-107 automated matches                                                                            d3hi1a2 A:108-214 automated matches                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------3hi1A02 A:109-211 Immunoglobulins                                                                      --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee...eeeee....eeeeeeeeeeehhh.eeeeee......eeeee...ee.......eeeeeeeeeeeeee...hhhhheeeeeeeee..-eeee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee....eeeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeeee......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3hi1 A    1 EIVLTQSPGTLSLSAGERATLSCRASQSVSSRYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRVEPEDFAVYYCQQYDNS-VCTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC  214
                                    10        20       |29        39        49        59        69        79        89    | | 98       108       118       128       138       148       158       168       178       188       198       208      
                                                     27A                                                                 94 |                                                                                                                       
                                                                                                                           95                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3hi1B01 B:1-113 Immunoglobulins                                                                                            3hi1B02 B:114-212 Immunoglobulins                                                                  --- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.....ee.....eeeeeeee.......eeeeeee.....eeeeeeee....eee...hhh.eeeeeehhh.eeeeee...hhhhheeeeeee.............eee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhh..eeeeeeehhhheeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3hi1 B    1 QVQLQESGPGLVKPSETLSLTCTVSGGSISSHYWSWIRQSPGKGLQWIGYIYYSGSTNYSPSLKSRVTISVETAKNQFSLKLTSMTAADTAVYYCARGPVPAVFYGDYRLDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS  215
                                    10        20        30        40        50        60        70        80  |||   87        97   |||100G       110       120       130       140       150       160       170       180       190       200       210     
                                                                                                            82A||               100A||||||                                                                                                                   
                                                                                                             82B|                100B|||||                                                                                                                   
                                                                                                              82C                 100C||||                                                                                                                   
                                                                                                                                   100D|||                                                                                                                   
                                                                                                                                    100E||                                                                                                                   
                                                                                                                                     100F|                                                                                                                   
                                                                                                                                      100G                                                                                                                   


Chain G from PDB  Type:PROTEIN  Length:289
 aligned with ENV_HV1Y2 | P35961 from UniProtKB/Swiss-Prot  Length:843

    Alignment length:391
                                    98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478 
           ENV_HV1Y2     89 TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTTSSSWETMEKGEIKNCSFNITTSIRDKVQKEYALFYNLDVVPIDNASYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNNTRKSINIGPGRALYTTGEIIGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE  479
               SCOP domains d3hi1g_ G: gp120 core                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhhhhhhhhh.........----------------------------------------------------------------------.......eeee......eeee....eeeeee.......eeee..eeee.............eee.........eeee.........eeeeeeeeeeeeee....------------------------...eeeeehhhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeee....eeee.hhhhh....--------.eeeeeeeee.........................eeeeeeeeee........eeeee.....hhhhhhhhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3hi1 G   90 TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTG----------------------------------------------------------------------GSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNN------------------------RQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWND--------RNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE  492
                                    99       109       119    |    -         -         -         -         -         -         -     | 202       212       222       232       242       252       262       272       282       292        |-         -         -   |   333       343       353       363       373       383       393 |       -|      421       431       441       451       461       471       481       491 
                                                            124                                                                    198                                                                                                    301                      327                                                                 395      412                                                                                


Chain H from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3hi1H01 H:1-113 Immunoglobulins                                                                                            3hi1H02 H:114-212 Immunoglobulins                                                                  --- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.....ee.....eeeeeeee.......eeeeeee.....eeeeeeee....eee...hhh.eeeeeehhh.eeeeee...hhhhheeeeeee.............eee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhh..eeeeeeehhhheeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3hi1 H    1 QVQLQESGPGLVKPSETLSLTCTVSGGSISSHYWSWIRQSPGKGLQWIGYIYYSGSTNYSPSLKSRVTISVETAKNQFSLKLTSMTAADTAVYYCARGPVPAVFYGDYRLDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS  215
                                    10        20        30        40        50        60        70        80  |||   87        97   |||100G       110       120       130       140       150       160       170       180       190       200       210     
                                                                                                            82A||               100A||||||                                                                                                                   
                                                                                                             82B|                100B|||||                                                                                                                   
                                                                                                              82C                 100C||||                                                                                                                   
                                                                                                                                   100D|||                                                                                                                   
                                                                                                                                    100E||                                                                                                                   
                                                                                                                                     100F|                                                                                                                   
                                                                                                                                      100G                                                                                                                   


Chain J from PDB  Type:PROTEIN  Length:289
 aligned with ENV_HV1Y2 | P35961 from UniProtKB/Swiss-Prot  Length:843

    Alignment length:391
                                    98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478 
           ENV_HV1Y2     89 TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTTSSSWETMEKGEIKNCSFNITTSIRDKVQKEYALFYNLDVVPIDNASYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNNTRKSINIGPGRALYTTGEIIGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE  479
               SCOP domains d3hi1j_ J: gp120 core                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhhhhhhhhh.........----------------------------------------------------------------------.......eeee......eeee....eeeeee.......eeee..eeee.............eee.........eeee.........eeeeeeeeeeeee.....------------------------...eeeehhhhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeee...eeeee.hhhhh....--------..eeeeeeeee........................eeeeeeeeee........eeeee.....hhhhhhhhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3hi1 J   90 TENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTG----------------------------------------------------------------------GSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNN------------------------RQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWND--------RNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE  492
                                    99       109       119    |    -         -         -         -         -         -         -     | 202       212       222       232       242       252       262       272       282       292        |-         -         -   |   333       343       353       363       373       383       393 |       -|      421       431       441       451       461       471       481       491 
                                                            124                                                                    198                                                                                                    301                      327                                                                 395      412                                                                                


Chain L from PDB  Type:PROTEIN  Length:215
 aligned with Q6PIL8_HUMAN | Q6PIL8 from UniProtKB/TrEMBL  Length:236

    Alignment length:216
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230      
        Q6PIL8_HUMAN     21 ENVLTQSPGTLSLSPGERATLSCRASQSLSSSYLAWYQQKPGQAPRLLIYGVSSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGTSRPITFGQGTRLDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC  236
               SCOP domains d3hi1l1 L:1-107 automated matches                                                                            d3hi1l2 L:108-214 automated matches                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------3hi1L02 L:109-211 Immunoglobulins                                                                      --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee...eeeee....eeeeeeeeeeehhh.eeeeee......eeeee...ee.......eeeeeeeeeeeeee........eeeeeeeee..-eeee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee....eeeeeee..ee....eeeee.........eeeeeeeeeehhhhh...eeeeeeee......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3hi1 L    1 EIVLTQSPGTLSLSAGERATLSCRASQSVSSRYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRVEPEDFAVYYCQQYDNS-VCTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC  214
                                    10        20       |29        39        49        59        69        79        89    | | 98       108       118       128       138       148       158       168       178       188       198       208      
                                                     27A                                                                 94 |                                                                                                                       
                                                                                                                           95
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HI1)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,L   (Q6PIL8_HUMAN | Q6PIL8)

Chain G,J   (ENV_HV1Y2 | P35961)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0030683    evasion or tolerance by virus of host immune response    Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0002223    stimulatory C-type lectin receptor signaling pathway    Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019082    viral protein processing    Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a viral protein.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0044174    host cell endosome    A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.
    GO:0044175    host cell endosome membrane    The lipid bilayer surrounding a host cell endosome.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ENV_HV1Y2 | P35961: 1g9n 1rzk 1yyl 1yym 2i5y 2i60 2ny7 2qad 3tgq 4dvr 4jo3 4jzw 4jzz 4k0a 4ka2 4laj 4r4f 4rqs 4rwy 5a7x 5a8h
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        Q6PIL8_HUMAN | Q6PIL8: 1u6a 3dvg 3dvn 3eyq 4oqt

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3HI1)