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(-) Description

Title :  PHOSPHORYLATION REGULATES ASSEMBLY OF THE CASPASE-6 SUBSTRATE-BINDING GROOVE
 
Authors :  E. M. Velazquez-Delgado, J. A. Hardy
Date :  27 May 11  (Deposition) - 11 Apr 12  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.88
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Phosphomimetic, Caspase, Apoptosis, Zymogen, Hydrolase, Huntington'S, Alzheimer'S, Cancer, Protease, Cytosol (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. M. Velazquez-Delgado, J. A. Hardy
Phosphorylation Regulates Assembly Of The Caspase-6 Substrate-Binding Groove.
Structure V. 20 742 2012
PubMed-ID: 22483120  |  Reference-DOI: 10.1016/J.STR.2012.02.003

(-) Compounds

Molecule 1 - CASPASE-6
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.4.22.59
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3) T7EXPRESS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CASP6, MCH2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CASP-6, APOPTOTIC PROTEASE MCH-2, CASPASE-6 SUBUNIT P18, CASPASE-6 SUBUNIT P11

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3S8E)

(-) Sites  (0, 0)

(no "Site" information available for 3S8E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S8E)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser D:218 -His D:219
2Phe F:263 -Cys F:264

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 16)

Asymmetric Unit (2, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029242E35KCASP6_HUMANPolymorphism11574697A/B/C/D/E/F/G/HE35K
2UniProtVAR_016130A109TCASP6_HUMANPolymorphism5030674A/B/C/D/E/F/G/HA109T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029242E35KCASP6_HUMANPolymorphism11574697A/BE35K
2UniProtVAR_016130A109TCASP6_HUMANPolymorphism5030674A/BA109T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029242E35KCASP6_HUMANPolymorphism11574697C/DE35K
2UniProtVAR_016130A109TCASP6_HUMANPolymorphism5030674C/DA109T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029242E35KCASP6_HUMANPolymorphism11574697E/FE35K
2UniProtVAR_016130A109TCASP6_HUMANPolymorphism5030674E/FA109T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029242E35KCASP6_HUMANPolymorphism11574697G/HE35K
2UniProtVAR_016130A109TCASP6_HUMANPolymorphism5030674G/HA109T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 32)

Asymmetric Unit (4, 32)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP6_HUMAN43-167
 
 
 
 
 
 
 		  8A:43-163
B:43-163
C:43-163
D:43-163
E:43-163
F:43-163
G:43-163
H:43-163
2CASPASE_HISPS01121 Caspase family histidine active site.CASP6_HUMAN108-122
 
 
 
 
 
 
 		  8A:108-122
B:108-122
C:108-122
D:108-122
E:108-122
F:108-122
G:108-122
H:108-122
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP6_HUMAN154-165
 
 
 
 
 
 
 		  8A:154-163
B:154-163
C:154-163
D:154-163
E:154-163
F:154-163
G:154-163
H:154-163
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP6_HUMAN196-290
 
 
 
 
 
 
 		  8A:196-290
B:196-290
C:196-290
D:197-290
E:196-290
F:196-290
G:197-290
H:197-290
Biological Unit 1 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP6_HUMAN43-167
 
 
 
 
 
 
 		  2A:43-163
B:43-163
-
-
-
-
-
-
2CASPASE_HISPS01121 Caspase family histidine active site.CASP6_HUMAN108-122
 
 
 
 
 
 
 		  2A:108-122
B:108-122
-
-
-
-
-
-
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP6_HUMAN154-165
 
 
 
 
 
 
 		  2A:154-163
B:154-163
-
-
-
-
-
-
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP6_HUMAN196-290
 
 
 
 
 
 
 		  2A:196-290
B:196-290
-
-
-
-
-
-
Biological Unit 2 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP6_HUMAN43-167
 
 
 
 
 
 
 		  2-
-
C:43-163
D:43-163
-
-
-
-
2CASPASE_HISPS01121 Caspase family histidine active site.CASP6_HUMAN108-122
 
 
 
 
 
 
 		  2-
-
C:108-122
D:108-122
-
-
-
-
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP6_HUMAN154-165
 
 
 
 
 
 
 		  2-
-
C:154-163
D:154-163
-
-
-
-
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP6_HUMAN196-290
 
 
 
 
 
 
 		  2-
-
C:196-290
D:197-290
-
-
-
-
Biological Unit 3 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP6_HUMAN43-167
 
 
 
 
 
 
 		  2-
-
-
-
E:43-163
F:43-163
-
-
2CASPASE_HISPS01121 Caspase family histidine active site.CASP6_HUMAN108-122
 
 
 
 
 
 
 		  2-
-
-
-
E:108-122
F:108-122
-
-
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP6_HUMAN154-165
 
 
 
 
 
 
 		  2-
-
-
-
E:154-163
F:154-163
-
-
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP6_HUMAN196-290
 
 
 
 
 
 
 		  2-
-
-
-
E:196-290
F:196-290
-
-
Biological Unit 4 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP6_HUMAN43-167
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:43-163
H:43-163
2CASPASE_HISPS01121 Caspase family histidine active site.CASP6_HUMAN108-122
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:108-122
H:108-122
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP6_HUMAN154-165
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:154-163
H:154-163
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP6_HUMAN196-290
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:197-290
H:197-290

(-) Exons   (5, 40)

Asymmetric Unit (5, 40)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000002651641bENSE00001018825chr4:110624629-110624512118CASP6_HUMAN1-14140--
1.3ENST000002651643ENSE00000935048chr4:110619498-11061945643CASP6_HUMAN14-28150--
1.4bENST000002651644bENSE00000935047chr4:110618924-110618778147CASP6_HUMAN28-77508A:30-77
B:30-77
C:30-77
D:29-77
E:30-77
F:30-77
G:29-77
H:30-77		48
48
48
49
48
48
49
48
1.5bENST000002651645bENSE00000935046chr4:110617642-11061756677CASP6_HUMAN77-103278A:77-103
B:77-103
C:77-103
D:77-103
E:77-103
F:77-103
G:77-103
H:77-103		27
27
27
27
27
27
27
27
1.6cENST000002651646cENSE00000935045chr4:110615856-110615681176CASP6_HUMAN103-161598A:103-161
B:103-161
C:103-161
D:103-161
E:103-161
F:103-161
G:103-161
H:103-161		59
59
59
59
59
59
59
59
1.7cENST000002651647cENSE00000935044chr4:110612165-110612006160CASP6_HUMAN162-215548A:162-214 (gaps)
B:162-213 (gaps)
C:162-214 (gaps)
D:162-214 (gaps)
E:162-215 (gaps)
F:162-214 (gaps)
G:162-213 (gaps)
H:162-212 (gaps)		53
52
53
53
54
53
52
51
1.8dENST000002651648dENSE00001820381chr4:110610724-110609898827CASP6_HUMAN215-293798A:222-292 (gaps)
B:222-291 (gaps)
C:222-292 (gaps)
D:218-291 (gaps)
E:215-292 (gaps)
F:222-292 (gaps)
G:221-292 (gaps)
H:219-292 (gaps)		71
70
71
74
78
71
72
74

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:219
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:263
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289   
          CASP6_HUMAN    30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3s8ea_ A: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh.......eeeeee......eee....eeehhhhhhhhh...hhhhh...eeeeee..--------------------------------.eee......eeeee....-------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...-----.........eeee............ Sec.struct. author
                 SAPs(SNPs) -----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------CASPASE_P20  PDB: A:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: A:196-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: A:30-77 UniProt: 28-77          -------------------------Exon 1.6c  PDB: A:103-161 UniProt: 103-161                 Exon 1.7c  PDB: A:162-214 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.5b  PDB: A:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: A:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3s8e A  30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC--------------------------------SVYTLPAGADFLMCYSVAE-------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVDQRRVD-----SAIGKKQVPCFASMLTKKLHFFPKS 292
                                    39        49        59        69        79        89        99       109       119       129       139       149       159   |     -         -         -      |199       209    |    -  |    229       239       249       259  |    269       279       289   
                                                                                                                                                               163                              196               214     222                                     262   268                        


Chain B from PDB  Type:PROTEIN  Length:214
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:262
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289  
          CASP6_HUMAN    30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPK 291
               SCOP domains d3s8eb_ B: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh.......eeeeee......eee....eeehhhhhhhhh...hhhhh...eeeeee..--------------------------------.eee......eeeee...--------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..--------.......eeee........... Sec.struct. author
                 SAPs(SNPs) -----K-------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------CASPASE_P20  PDB: B:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: B:196-290 UniProt: 196-290                                                   - PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: B:30-77 UniProt: 28-77          -------------------------Exon 1.6c  PDB: B:103-161 UniProt: 103-161                 Exon 1.7c  PDB: B:162-213 (gaps) UniProt: 162-215     ---------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.5b  PDB: B:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: B:222-291 (gaps) UniProt: 215-293 [INCOMPLETE]                Transcript 1 (2)
                 3s8e B  30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC--------------------------------SVYTLPAGADFLMCYSVA--------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVDQRRV--------IGKKQVPCFASMLTKKLHFFPK 291
                                    39        49        59        69        79        89        99       109       119       129       139       149       159   |     -         -         -      |199       209   |     -  |    229       239       249       259 |       -|      279       289  
                                                                                                                                                               163                              196              213      222                                    261      270                     


Chain C from PDB  Type:PROTEIN  Length:219
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:263
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289   
          CASP6_HUMAN    30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3s8ec_ C: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh.......eeeeee......eee....eeehhhhhhh.....hhhhh...eeeeee..--------------------------------..........eeeee....-------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh....-----........eeee............ Sec.struct. author
                 SAPs(SNPs) -----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------CASPASE_P20  PDB: C:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: C:196-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: C:30-77 UniProt: 28-77          -------------------------Exon 1.6c  PDB: C:103-161 UniProt: 103-161                 Exon 1.7c  PDB: C:162-214 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.5b  PDB: C:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: C:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3s8e C  30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC--------------------------------SVYTLPAGADFLMCYSVAE-------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVDQRRVDF-----AIGKKQVPCFASMLTKKLHFFPKS 292
                                    39        49        59        69        79        89        99       109       119       129       139       149       159   |     -         -         -      |199       209    |    -  |    229       239       249       259   |   269       279       289   
                                                                                                                                                               163                              196               214     222                                      263   269                       


Chain D from PDB  Type:PROTEIN  Length:221
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:263
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288   
          CASP6_HUMAN    29 EMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPK 291
               SCOP domains d3s8ed_ D: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh.......eeeeee......eee....eeehhhhhhhhh...hhhhh...eeeeee..---------------------------------.........eeeee....---........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..------.........eeee........... Sec.struct. author
                 SAPs(SNPs) ------K-------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------CASPASE_P20  PDB: D:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: D:197-290 UniProt: 196-290                                                   - PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: D:29-77 UniProt: 28-77           -------------------------Exon 1.6c  PDB: D:103-161 UniProt: 103-161                 Exon 1.7c  PDB: D:162-214 (gaps) UniProt: 162-215     ---------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------Exon 1.5b  PDB: D:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: D:218-291 (gaps) UniProt: 215-293 [INCOMPLETE]                Transcript 1 (2)
                 3s8e D  29 EMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC---------------------------------VYTLPAGADFLMCYSVAE---SHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVDQRRV------SAIGKKQVPCFASMLTKKLHFFPK 291
                                    38        48        58        68        78        88        98       108       118       128       138       148       158    |    -         -         -       198       208     | 218       228       238       248       258  |    268       278       288   
                                                                                                                                                                163                               197              214 218                                        261    268                       


Chain E from PDB  Type:PROTEIN  Length:219
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:263
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289   
          CASP6_HUMAN    30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3s8ee_ E: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh.......eeeeee......eee....eeehhhhhhhhh...hhhhh...eeeeee..--------------------------------..ee......eeeeee....------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..------.........eeee............ Sec.struct. author
                 SAPs(SNPs) -----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------CASPASE_P20  PDB: E:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: E:196-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: E:30-77 UniProt: 28-77          -------------------------Exon 1.6c  PDB: E:103-161 UniProt: 103-161                 Exon 1.7c  PDB: E:162-215 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.5b  PDB: E:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: E:215-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3s8e E  30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC--------------------------------SVYTLPAGADFLMCYSVAEG------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVDQRRV------SAIGKKQVPCFASMLTKKLHFFPKS 292
                                    39        49        59        69        79        89        99       109       119       129       139       149       159   |     -         -         -      |199       209     |   -  |    229       239       249       259 |     269       279       289   
                                                                                                                                                               163                              196                215    222                                    261    268                        


Chain F from PDB  Type:PROTEIN  Length:222
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:263
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289   
          CASP6_HUMAN    30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3s8ef_ F: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh.......eeeeee......eee....eeehhhhhhhhh...hhhhh...eeeeee..--------------------------------.ee.......eeeeee...-------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....--..........eeee............ Sec.struct. author
                 SAPs(SNPs) -----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------CASPASE_P20  PDB: F:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: F:196-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: F:30-77 UniProt: 28-77          -------------------------Exon 1.6c  PDB: F:103-161 UniProt: 103-161                 Exon 1.7c  PDB: F:162-214 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.5b  PDB: F:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: F:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3s8e F  30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC--------------------------------SVYTLPAGADFLMCYSVAE-------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVDQRRVDFC--PSAIGKKQVPCFASMLTKKLHFFPKS 292
                                    39        49        59        69        79        89        99       109       119       129       139       149       159   |     -         -         -      |199       209    |    -  |    229       239       249       259    |  269       279       289   
                                                                                                                                                               163                              196               214     222                                       264  |                         
                                                                                                                                                                                                                                                                       267                         


Chain G from PDB  Type:PROTEIN  Length:216
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:264
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288    
          CASP6_HUMAN    29 EMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3s8eg_ G: automated matches                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh.......eeeeee......eee....eeehhhhhhhhh...hhhhh...eeeeee..---------------------------------.........eeeee...-------.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..--------.......eeee............ Sec.struct. author
                 SAPs(SNPs) ------K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------CASPASE_P20  PDB: G:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: G:197-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: G:29-77 UniProt: 28-77           -------------------------Exon 1.6c  PDB: G:103-161 UniProt: 103-161                 Exon 1.7c  PDB: G:162-213 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------Exon 1.5b  PDB: G:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: G:221-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3s8e G  29 EMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC---------------------------------VYTLPAGADFLMCYSVA-------ETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVDQRRV--------IGKKQVPCFASMLTKKLHFFPKS 292
                                    38        48        58        68        78        88        98       108       118       128       138       148       158    |    -         -         -       198       208    |    -  |    228       238       248       258  |      - |     278       288    
                                                                                                                                                                163                               197             213     221                                     261      270                      


Chain H from PDB  Type:PROTEIN  Length:217
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:263
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289   
          CASP6_HUMAN    30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3s8eh_ H: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh.......eeeeee......eee....eeehhhhhhhhh...hhhhh...eeeeee..---------------------------------.........eeeee..------.......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..-------........eeee............ Sec.struct. author
                 SAPs(SNPs) -----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------CASPASE_P20  PDB: H:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: H:197-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: H:30-77 UniProt: 28-77          -------------------------Exon 1.6c  PDB: H:103-161 UniProt: 103-161                 Exon 1.7c  PDB: H:162-212 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.5b  PDB: H:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: H:219-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3s8e H  30 MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC---------------------------------VYTLPAGADFLMCYSV------HRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVDQRRV-------AIGKKQVPCFASMLTKKLHFFPKS 292
                                    39        49        59        69        79        89        99       109       119       129       139       149       159   |     -         -         -       199       209  |    219       229       239       249       259 |     269       279       289   
                                                                                                                                                               163                               197            212    219                                       261     269
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S8E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3S8E)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (CASP6_HUMAN | P55212)
molecular function
    GO:0004197    cysteine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0097153    cysteine-type endopeptidase activity involved in apoptotic process    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile, and contributing to the apoptotic process.
    GO:0008234    cysteine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0006921    cellular component disassembly involved in execution phase of apoptosis    The breakdown of structures such as organelles, proteins, or other macromolecular structures during apoptosis.
    GO:0030855    epithelial cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0042981    regulation of apoptotic process    Any process that modulates the occurrence or rate of cell death by apoptotic process.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.

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  3s8e
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  CASP6_HUMAN | P55212
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  3.4.22.59
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CASP6_HUMAN | P55212: 1mi9 2wdp 3k7e 3nkf 3nr2 3od5 3p45 3p4u 3qnw 3s70 3v6l 3v6m 4ejf 4fxo 4hva 4iyr 4n5d 4n6g 4n7j 4n7m 4nbk 4nbl 4nbn

(-) Related Entries Specified in the PDB File

2wdp THE SAME PROTEIN
3k7e THE SAME PROTEIN
3nkf THE SAME PROTEIN
3nr2 THE SAME PROTEIN
3od5 THE SAME PROTEIN