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(-) Description

Title :  INHIBITION OF CASPASE-6 ACTIVITY BY SINGLE MUTATION OUTSIDE THE ACTIVE SITE
 
Authors :  Q. Cao, X. J. Wang, D. F. Liu, L. F. Li, X. D. Su
Date :  20 Dec 11  (Deposition) - 28 Mar 12  (Release) - 13 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.69
Chains :  Asym. Unit :  A,B,C,D,F,G,I,J
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  F,G  (1x)
Biol. Unit 4:  I,J  (1x)
Keywords :  Caspase Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Cao, X. J. Wang, C. W. Liu, D. F. Liu, L. F. Li, Y. Q. Gao, X. D. Su
Inhibitory Mechanism Of Caspase-6 Phosphorylation Revealed By Crystal Structures, Molecular Dynamics Simulations, And Biochemical Assays
J. Biol. Chem. V. 287 15371 2012
PubMed-ID: 22433863  |  Reference-DOI: 10.1074/JBC.M112.351213

(-) Compounds

Molecule 1 - CASPASE-6
    Chains: A, B, C, D, F, G, I, J
    EC Number: 3.4.22.59
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 24-293
    Gene: CASP6
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CASP-6, APOPTOTIC PROTEASE MCH-2, CASPASE-6 SUBUNIT P18, CASPASE-6 SUBUNIT P11

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDFGIJ
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     FG  
Biological Unit 4 (1x):       IJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3V6M)

(-) Sites  (0, 0)

(no "Site" information available for 3V6M)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3V6M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3V6M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 16)

Asymmetric Unit (2, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029242E35KCASP6_HUMANPolymorphism11574697A/B/C/D/F/G/I/JE35K
2UniProtVAR_016130A109TCASP6_HUMANPolymorphism5030674A/B/C/D/F/G/I/JA109T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029242E35KCASP6_HUMANPolymorphism11574697A/BE35K
2UniProtVAR_016130A109TCASP6_HUMANPolymorphism5030674A/BA109T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029242E35KCASP6_HUMANPolymorphism11574697C/DE35K
2UniProtVAR_016130A109TCASP6_HUMANPolymorphism5030674C/DA109T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029242E35KCASP6_HUMANPolymorphism11574697F/GE35K
2UniProtVAR_016130A109TCASP6_HUMANPolymorphism5030674F/GA109T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_029242E35KCASP6_HUMANPolymorphism11574697I/JE35K
2UniProtVAR_016130A109TCASP6_HUMANPolymorphism5030674I/JA109T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 32)

Asymmetric Unit (4, 32)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP6_HUMAN43-167
 
 
 
 
 
 
 		  8A:43-163
B:43-163
C:43-163
D:43-163
F:43-163
G:43-163
I:43-163
J:43-163
2CASPASE_HISPS01121 Caspase family histidine active site.CASP6_HUMAN108-122
 
 
 
 
 
 
 		  8A:108-122
B:108-122
C:108-122
D:108-122
F:108-122
G:108-122
I:108-122
J:108-122
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP6_HUMAN154-165
 
 
 
 
 
 
 		  8A:154-163
B:154-163
C:154-163
D:154-163
F:154-163
G:154-163
I:154-163
J:154-163
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP6_HUMAN196-290
 
 
 
 
 
 
 		  8A:199-290
B:198-290
C:198-290
D:198-290
F:198-290
G:198-290
I:198-290
J:198-290
Biological Unit 1 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP6_HUMAN43-167
 
 
 
 
 
 
 		  2A:43-163
B:43-163
-
-
-
-
-
-
2CASPASE_HISPS01121 Caspase family histidine active site.CASP6_HUMAN108-122
 
 
 
 
 
 
 		  2A:108-122
B:108-122
-
-
-
-
-
-
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP6_HUMAN154-165
 
 
 
 
 
 
 		  2A:154-163
B:154-163
-
-
-
-
-
-
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP6_HUMAN196-290
 
 
 
 
 
 
 		  2A:199-290
B:198-290
-
-
-
-
-
-
Biological Unit 2 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP6_HUMAN43-167
 
 
 
 
 
 
 		  2-
-
C:43-163
D:43-163
-
-
-
-
2CASPASE_HISPS01121 Caspase family histidine active site.CASP6_HUMAN108-122
 
 
 
 
 
 
 		  2-
-
C:108-122
D:108-122
-
-
-
-
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP6_HUMAN154-165
 
 
 
 
 
 
 		  2-
-
C:154-163
D:154-163
-
-
-
-
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP6_HUMAN196-290
 
 
 
 
 
 
 		  2-
-
C:198-290
D:198-290
-
-
-
-
Biological Unit 3 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP6_HUMAN43-167
 
 
 
 
 
 
 		  2-
-
-
-
F:43-163
G:43-163
-
-
2CASPASE_HISPS01121 Caspase family histidine active site.CASP6_HUMAN108-122
 
 
 
 
 
 
 		  2-
-
-
-
F:108-122
G:108-122
-
-
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP6_HUMAN154-165
 
 
 
 
 
 
 		  2-
-
-
-
F:154-163
G:154-163
-
-
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP6_HUMAN196-290
 
 
 
 
 
 
 		  2-
-
-
-
F:198-290
G:198-290
-
-
Biological Unit 4 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CASPASE_P20PS50208 Caspase family p20 domain profile.CASP6_HUMAN43-167
 
 
 
 
 
 
 		  2-
-
-
-
-
-
I:43-163
J:43-163
2CASPASE_HISPS01121 Caspase family histidine active site.CASP6_HUMAN108-122
 
 
 
 
 
 
 		  2-
-
-
-
-
-
I:108-122
J:108-122
3CASPASE_CYSPS01122 Caspase family cysteine active site.CASP6_HUMAN154-165
 
 
 
 
 
 
 		  2-
-
-
-
-
-
I:154-163
J:154-163
4CASPASE_P10PS50207 Caspase family p10 domain profile.CASP6_HUMAN196-290
 
 
 
 
 
 
 		  2-
-
-
-
-
-
I:198-290
J:198-290

(-) Exons   (5, 40)

Asymmetric Unit (5, 40)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000002651641bENSE00001018825chr4:110624629-110624512118CASP6_HUMAN1-14140--
1.3ENST000002651643ENSE00000935048chr4:110619498-11061945643CASP6_HUMAN14-28150--
1.4bENST000002651644bENSE00000935047chr4:110618924-110618778147CASP6_HUMAN28-77508A:31-77
B:31-77
C:31-77
D:31-77
F:32-77
G:31-77
I:31-77
J:31-77		47
47
47
47
46
47
47
47
1.5bENST000002651645bENSE00000935046chr4:110617642-11061756677CASP6_HUMAN77-103278A:77-103
B:77-103
C:77-103
D:77-103
F:77-103
G:77-103
I:77-103
J:77-103		27
27
27
27
27
27
27
27
1.6cENST000002651646cENSE00000935045chr4:110615856-110615681176CASP6_HUMAN103-161598A:103-161
B:103-161
C:103-161
D:103-161
F:103-161
G:103-161
I:103-161
J:103-161		59
59
59
59
59
59
59
59
1.7cENST000002651647cENSE00000935044chr4:110612165-110612006160CASP6_HUMAN162-215548A:162-212 (gaps)
B:162-212 (gaps)
C:162-212 (gaps)
D:162-212 (gaps)
F:162-212 (gaps)
G:162-212 (gaps)
I:162-212 (gaps)
J:162-212 (gaps)		51
51
51
51
51
51
51
51
1.8dENST000002651648dENSE00001820381chr4:110610724-110609898827CASP6_HUMAN215-293798A:222-292 (gaps)
B:222-292 (gaps)
C:222-292 (gaps)
D:222-292 (gaps)
F:222-292 (gaps)
G:222-292 (gaps)
I:222-292 (gaps)
J:222-292 (gaps)		71
71
71
71
71
71
71
71

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:262
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290  
          CASP6_HUMAN    31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3v6ma_ A: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee....hhhhh.....hhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhh.........eeeeeee.....eee....eeehhhhhhhhh...hhhhh...eeeeeee.-----------------------------------.......eeeee..---------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.-------------...eeee............ Sec.struct. author
                 SAPs(SNPs) ----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------CASPASE_P20  PDB: A:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: A:199-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: A:31-77 UniProt: 28-77         -------------------------Exon 1.6c  PDB: A:103-161 UniProt: 103-161                 Exon 1.7c  PDB: A:162-212 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------Exon 1.5b  PDB: A:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: A:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3v6m A  31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC-----------------------------------TLPAGADFLMCYSV---------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVEQRR-------------QVPCFASMLTKKLHFFPKS 292
                                    40        50        60        70        80        90       100       110       120       130       140       150       160  |      -         -         -       200       210 |       - |     230       240       250       260         -   |   280       290  
                                                                                                                                                              163                                 199          212       222                                   260           274                  


Chain B from PDB  Type:PROTEIN  Length:204
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:262
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290  
          CASP6_HUMAN    31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3v6mb_ B: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh.........eeeeeee.....eee....eeehhhhhhhhh...hhhhh...eeeeeee.----------------------------------........eeeee..---------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh---------------..eeee............ Sec.struct. author
                 SAPs(SNPs) ----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------CASPASE_P20  PDB: B:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: B:198-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: B:31-77 UniProt: 28-77         -------------------------Exon 1.6c  PDB: B:103-161 UniProt: 103-161                 Exon 1.7c  PDB: B:162-212 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------Exon 1.5b  PDB: B:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: B:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3v6m B  31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC----------------------------------YTLPAGADFLMCYSV---------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVEQR---------------VPCFASMLTKKLHFFPKS 292
                                    40        50        60        70        80        90       100       110       120       130       140       150       160  |      -         -         -       200       210 |       - |     230       240       250        |-         -    |  280       290  
                                                                                                                                                              163                                198           212       222                                  259             275                 


Chain C from PDB  Type:PROTEIN  Length:205
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:262
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290  
          CASP6_HUMAN    31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3v6mc_ C: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh.........eeeeeee.....eee....eeehhhhhhhhh...hhhhh...eeeeeee.----------------------------------........eeeee..---------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.--------------..eeee............ Sec.struct. author
                 SAPs(SNPs) ----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------CASPASE_P20  PDB: C:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: C:198-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: C:31-77 UniProt: 28-77         -------------------------Exon 1.6c  PDB: C:103-161 UniProt: 103-161                 Exon 1.7c  PDB: C:162-212 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------Exon 1.5b  PDB: C:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: C:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3v6m C  31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC----------------------------------YTLPAGADFLMCYSV---------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVEQRR--------------VPCFASMLTKKLHFFPKS 292
                                    40        50        60        70        80        90       100       110       120       130       140       150       160  |      -         -         -       200       210 |       - |     230       240       250       260         -    |  280       290  
                                                                                                                                                              163                                198           212       222                                   260            275                 


Chain D from PDB  Type:PROTEIN  Length:204
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:262
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290  
          CASP6_HUMAN    31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3v6md_ D: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh.........eeeeeee.....eee....eeehhhhhhh.....hhhhh...eeeeeee.----------------------------------........eeeee..---------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh---------------..eeee............ Sec.struct. author
                 SAPs(SNPs) ----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------CASPASE_P20  PDB: D:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: D:198-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: D:31-77 UniProt: 28-77         -------------------------Exon 1.6c  PDB: D:103-161 UniProt: 103-161                 Exon 1.7c  PDB: D:162-212 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------Exon 1.5b  PDB: D:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: D:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3v6m D  31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC----------------------------------YTLPAGADFLMCYSV---------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVEQR---------------VPCFASMLTKKLHFFPKS 292
                                    40        50        60        70        80        90       100       110       120       130       140       150       160  |      -         -         -       200       210 |       - |     230       240       250        |-         -    |  280       290  
                                                                                                                                                              163                                198           212       222                                  259             275                 


Chain F from PDB  Type:PROTEIN  Length:203
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:261
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291 
          CASP6_HUMAN    32 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3v6mf_ F: automated matches                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh.........eeeeeee.....eee....eeehhhhhhhhh...hhhhh...eeeeeee.----------------------------------........eeeee..---------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh---------------..eeee............ Sec.struct. author
                 SAPs(SNPs) ---K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------CASPASE_P20  PDB: F:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: F:198-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: F:32-77 UniProt: 28-77        -------------------------Exon 1.6c  PDB: F:103-161 UniProt: 103-161                 Exon 1.7c  PDB: F:162-212 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------Exon 1.5b  PDB: F:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: F:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3v6m F  32 DPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC----------------------------------YTLPAGADFLMCYSV---------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVEQR---------------VPCFASMLTKKLHFFPKS 292
                                    41        51        61        71        81        91       101       111       121       131       141       151       161 |       -         -         -      |201       211|        -|      231       241       251       | -         -   |   281       291 
                                                                                                                                                             163                                198           212       222                                  259             275                 


Chain G from PDB  Type:PROTEIN  Length:204
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:262
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290  
          CASP6_HUMAN    31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3v6mg_ G: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh.........eeeeeee.....eee....eeehhhhhhhhh...hhhhh...eeeeeee.----------------------------------........eeeee..---------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh---------------..eeee............ Sec.struct. author
                 SAPs(SNPs) ----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------CASPASE_P20  PDB: G:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: G:198-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: G:31-77 UniProt: 28-77         -------------------------Exon 1.6c  PDB: G:103-161 UniProt: 103-161                 Exon 1.7c  PDB: G:162-212 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------Exon 1.5b  PDB: G:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: G:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3v6m G  31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC----------------------------------YTLPAGADFLMCYSV---------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVEQR---------------VPCFASMLTKKLHFFPKS 292
                                    40        50        60        70        80        90       100       110       120       130       140       150       160  |      -         -         -       200       210 |       - |     230       240       250        |-         -    |  280       290  
                                                                                                                                                              163                                198           212       222                                  259             275                 


Chain I from PDB  Type:PROTEIN  Length:204
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:262
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290  
          CASP6_HUMAN    31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3v6mi_ I: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh.........eeeeeee.....eee....eeehhhhhhhhh...hhhhh...eeeeeee.----------------------------------........eeeee..---------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh---------------..eeee............ Sec.struct. author
                 SAPs(SNPs) ----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------CASPASE_P20  PDB: I:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: I:198-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: I:31-77 UniProt: 28-77         -------------------------Exon 1.6c  PDB: I:103-161 UniProt: 103-161                 Exon 1.7c  PDB: I:162-212 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------Exon 1.5b  PDB: I:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: I:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3v6m I  31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC----------------------------------YTLPAGADFLMCYSV---------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVEQR---------------VPCFASMLTKKLHFFPKS 292
                                    40        50        60        70        80        90       100       110       120       130       140       150       160  |      -         -         -       200       210 |       - |     230       240       250        |-         -    |  280       290  
                                                                                                                                                              163                                198           212       222                                  259             275                 


Chain J from PDB  Type:PROTEIN  Length:206
 aligned with CASP6_HUMAN | P55212 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:262
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290  
          CASP6_HUMAN    31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKS 292
               SCOP domains d3v6mj_ J: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee....hhhhh.....hhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh.......eeeeeee.....eee....eeehhhhhhhhh...hhhhh...eeeeeee.----------------------------------........eeeee..---------....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..-------------..eeee............ Sec.struct. author
                 SAPs(SNPs) ----K-------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------CASPASE_P20  PDB: J:43-163 UniProt: 43-167                                                                                   ----------------------------CASPASE_P10  PDB: J:198-290 UniProt: 196-290                                                   -- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------CASPASE_HIS    -------------------------------CASPASE_CYS ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.4b  PDB: J:31-77 UniProt: 28-77         -------------------------Exon 1.6c  PDB: J:103-161 UniProt: 103-161                 Exon 1.7c  PDB: J:162-212 (gaps) UniProt: 162-215     ----------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------Exon 1.5b  PDB: J:77-103   ---------------------------------------------------------------------------------------------------------------Exon 1.8d  PDB: J:222-292 (gaps) UniProt: 215-293 [INCOMPLETE]                 Transcript 1 (2)
                 3v6m J  31 FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAC----------------------------------YTLPAGADFLMCYSV---------TVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVEQRRV-------------VPCFASMLTKKLHFFPKS 292
                                    40        50        60        70        80        90       100       110       120       130       140       150       160  |      -         -         -       200       210 |       - |     230       240       250       260|        -    |  280       290  
                                                                                                                                                              163                                198           212       222                                    261           275
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3V6M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3V6M)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,F,G,I,J   (CASP6_HUMAN | P55212)
molecular function
    GO:0004197    cysteine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0097153    cysteine-type endopeptidase activity involved in apoptotic process    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile, and contributing to the apoptotic process.
    GO:0008234    cysteine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0006921    cellular component disassembly involved in execution phase of apoptosis    The breakdown of structures such as organelles, proteins, or other macromolecular structures during apoptosis.
    GO:0030855    epithelial cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0042981    regulation of apoptotic process    Any process that modulates the occurrence or rate of cell death by apoptotic process.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.

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  3v6m
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  CASP6_HUMAN | P55212
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  3.4.22.59
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CASP6_HUMAN | P55212: 1mi9 2wdp 3k7e 3nkf 3nr2 3od5 3p45 3p4u 3qnw 3s70 3s8e 3v6l 4ejf 4fxo 4hva 4iyr 4n5d 4n6g 4n7j 4n7m 4nbk 4nbl 4nbn

(-) Related Entries Specified in the PDB File

3nr2 3od5 3v6l