3NAI - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURES AND FUNCTIONAL ANALYSIS OF MURINE NOROVIRUS RNA-DEPENDENT RNA POLYMERASE

Authors :   K. H. Kim, J. H. Lee, I. Alam, Y. Park, S. Kang

Date :   02 Jun 10 (Deposition) - 08 Jun 11 (Release) - 08 Jun 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.56

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (2x)
Biol. Unit 2: B,C  (1x)

Keywords :   Rna-Dependent Rna Polymerase, Murine Norovirus, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. H. Kim, J. H. Lee, I. Alam, Y. Park, S. Kang
Crystal Structures And Functional Analysis Of Murine Norovirus Rna-Dependent Rna Polymerase
To Be Published
PubMed: search

Molecule 1 - RNA DEPENDENT RNA POLYMERASE
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B
	Expression System Strain	:	ER2566
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	MURINE NOROVIRUS 1
	Organism Taxid	:	223997
	Synonym	:	RDRP

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 28)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MG	3	Ligand/Ion	MAGNESIUM ION
3	MN3	6	Ligand/Ion	MANGANESE (III) ION
4	SO4	14	Ligand/Ion	SULFATE ION
5	URF	3	Ligand/Ion	5-FLUOROURACIL

Biological Unit 1 (4, 20)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MN3	4	Ligand/Ion	MANGANESE (III) ION
4	SO4	12	Ligand/Ion	SULFATE ION
5	URF	2	Ligand/Ion	5-FLUOROURACIL

Biological Unit 2 (4, 15)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MN3	4	Ligand/Ion	MANGANESE (III) ION
4	SO4	8	Ligand/Ion	SULFATE ION
5	URF	2	Ligand/Ion	5-FLUOROURACIL

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:245 , TYR A:246 , ASP A:346 , URF A:521 , HOH A:529 , HOH A:559 , HOH A:657	BINDING SITE FOR RESIDUE MG A 1
02	AC2	SOFTWARE	MG A:1 , ARG A:185 , ASP A:245 , ASP A:346 , ASP A:347 , ARG A:395 , HOH A:529 , HOH A:559	BINDING SITE FOR RESIDUE URF A 521
03	AC3	SOFTWARE	LYS A:210 , CYS A:213 , GLY A:221 , MN3 A:523	BINDING SITE FOR RESIDUE MN3 A 522
04	AC4	SOFTWARE	GLU A:211 , CYS A:213 , ILE A:214 , MN3 A:522 , HOH A:539 , HOH A:656	BINDING SITE FOR RESIDUE MN3 A 523
05	AC5	SOFTWARE	GLY A:51 , SER A:52 , SER A:61 , LEU A:62	BINDING SITE FOR RESIDUE SO4 A 524
06	AC6	SOFTWARE	PRO A:82 , GLN A:83	BINDING SITE FOR RESIDUE SO4 A 2
07	AC7	SOFTWARE	THR A:120 , LYS A:130 , MET A:195 , GLY A:304	BINDING SITE FOR RESIDUE SO4 A 3
08	AC8	SOFTWARE	TRP A:134 , GLY A:136	BINDING SITE FOR RESIDUE SO4 A 525
09	AC9	SOFTWARE	ASN A:237 , GLY A:400 , ASP A:401 , TRP A:405	BINDING SITE FOR RESIDUE SO4 A 526
10	BC1	SOFTWARE	ARG A:385 , GLN A:386	BINDING SITE FOR RESIDUE SO4 A 527
11	BC2	SOFTWARE	ARG A:7 , PRO A:8 , SER A:9	BINDING SITE FOR RESIDUE GOL A 528
12	BC3	SOFTWARE	ASP B:245 , TYR B:246 , ASP B:346 , URF B:521 , HOH B:581	BINDING SITE FOR RESIDUE MG B 2
13	BC4	SOFTWARE	MG B:2 , ARG B:185 , ASP B:245 , ASP B:346 , ASP B:347 , HOH B:576 , HOH B:635	BINDING SITE FOR RESIDUE URF B 521
14	BC5	SOFTWARE	LYS B:210 , CYS B:213 , GLY B:221 , MN3 B:523 , HOH B:551	BINDING SITE FOR RESIDUE MN3 B 522
15	BC6	SOFTWARE	CYS B:213 , ILE B:214 , MN3 B:522 , HOH B:554 , HOH B:634	BINDING SITE FOR RESIDUE MN3 B 523
16	BC7	SOFTWARE	THR B:28 , GLY B:51 , SER B:52 , SER B:61 , LEU B:62 , HOH B:577	BINDING SITE FOR RESIDUE SO4 B 524
17	BC8	SOFTWARE	ASP B:117 , THR B:120 , LYS B:130 , MET B:195	BINDING SITE FOR RESIDUE SO4 B 525
18	BC9	SOFTWARE	HIS B:149 , ASN B:152	BINDING SITE FOR RESIDUE SO4 B 526
19	CC1	SOFTWARE	TYR B:20 , ASP B:292 , TYR B:293 , TYR C:20 , ASP C:292	BINDING SITE FOR RESIDUE SO4 B 527
20	CC2	SOFTWARE	THR A:328 , GLU A:355 , THR B:328 , VAL B:330 , GLU B:355	BINDING SITE FOR RESIDUE SO4 B 528
21	CC3	SOFTWARE	ASP C:245 , TYR C:246 , ASP C:346 , URF C:521 , HOH C:563 , HOH C:632	BINDING SITE FOR RESIDUE MG C 3
22	CC4	SOFTWARE	MG C:3 , ARG C:185 , ASP C:245 , ASP C:346 , ASP C:347 , ARG C:395 , HOH C:632 , HOH C:636 , HOH C:638	BINDING SITE FOR RESIDUE URF C 521
23	CC5	SOFTWARE	LYS C:210 , CYS C:213 , MN3 C:523	BINDING SITE FOR RESIDUE MN3 C 522
24	CC6	SOFTWARE	GLU C:211 , CYS C:213 , ILE C:214 , MN3 C:522	BINDING SITE FOR RESIDUE MN3 C 523
25	CC7	SOFTWARE	GLY C:51 , SER C:52 , SER C:61 , LEU C:62	BINDING SITE FOR RESIDUE SO4 C 524
26	CC8	SOFTWARE	HIS C:149 , ASN C:152	BINDING SITE FOR RESIDUE SO4 C 525
27	CC9	SOFTWARE	GLY C:400 , ASP C:401 , TRP C:405 , HOH C:602	BINDING SITE FOR RESIDUE SO4 C 526
28	DC1	SOFTWARE	THR C:11 , ALA C:13	BINDING SITE FOR RESIDUE GOL C 2

(no "SS Bond" information available for 3NAI)

Asymmetric Unit

No.	Residues
1	Ser A:9	-	Gly A:10
2	Tyr A:124	-	Pro A:125
3	Gly A:380	-	Pro A:381
4	Gly A:491	-	Thr A:492
5	Tyr B:124	-	Pro B:125
6	Gly B:380	-	Pro B:381
7	Arg C:7	-	Pro C:8
8	Tyr C:124	-	Pro C:125

(no "SAP(SNP)/Variant" information available for 3NAI)

(no "PROSITE Motif" information available for 3NAI)

(no "Exon" information available for 3NAI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:486
 aligned with Q80J95_9CALI | Q80J95 from UniProtKB/TrEMBL  Length:1687

    Alignment length:486
                                  1193      1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363      1373      1383      1393      1403      1413      1423      1433      1443      1453      1463      1473      1483      1493      1503      1513      1523      1533      1543      1553      1563      1573      1583      1593      1603      1613      1623      1633      1643      1653      1663      
        Q80J95_9CALI   1184 RPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFGT 1669
               SCOP domains d3naia_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee..eeeeee.........eeeee...........ee.............hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh......hhhhhhhhh............hhhhhh.....hhhhhhhhhhhhhhhhh......eeeeee...ee.hhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...eee..ee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.eeee...eeeee.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..eeeeee..eeeeee....hhhhhhhhhhhh...ee..................ee..eeeee....eeeeehhhhhhhhhheeeeeee.............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3nai A    7 RPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFGT  492
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486

Chain B from PDB  Type:PROTEIN  Length:486
 aligned with Q80J95_9CALI | Q80J95 from UniProtKB/TrEMBL  Length:1687

    Alignment length:486
                                  1193      1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363      1373      1383      1393      1403      1413      1423      1433      1443      1453      1463      1473      1483      1493      1503      1513      1523      1533      1543      1553      1563      1573      1583      1593      1603      1613      1623      1633      1643      1653      1663      
        Q80J95_9CALI   1184 RPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFGT 1669
               SCOP domains d3naib_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee..eeeeee.........eeeee...........ee.............hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh........hhhhhhhhh............hhhhhh.....hhhhhhhhhhhhhhhhh......eeeeee...ee.hhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhh...eee..ee.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.eeee...eeeee.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeee..eeeeee....hhhhhhhhhhhh...ee..................ee..eeeeee..eeeeeehhhhhhhhhheeeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3nai B    7 RPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFGT  492
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486

Chain C from PDB  Type:PROTEIN  Length:486
 aligned with Q80J95_9CALI | Q80J95 from UniProtKB/TrEMBL  Length:1687

    Alignment length:486
                                  1193      1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363      1373      1383      1393      1403      1413      1423      1433      1443      1453      1463      1473      1483      1493      1503      1513      1523      1533      1543      1553      1563      1573      1583      1593      1603      1613      1623      1633      1643      1653      1663      
        Q80J95_9CALI   1184 RPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFGT 1669
               SCOP domains d3naic_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -----------------RdRP_1-3naiC01 C:24-490                                                                                                                                                                                                                                                                                                                                                                                                                                                            -- Pfam domains (1)
           Pfam domains (2) -----------------RdRP_1-3naiC02 C:24-490                                                                                                                                                                                                                                                                                                                                                                                                                                                            -- Pfam domains (2)
           Pfam domains (3) -----------------RdRP_1-3naiC03 C:24-490                                                                                                                                                                                                                                                                                                                                                                                                                                                            -- Pfam domains (3)
         Sec.struct. author ....ee..eeeeee.........eeeee...........ee.............hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh......hhhhhhhhh............hhhhhh.....hhhhhhhhhhhhhhhhhh.....eeeeee...ee.hhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh..eeeeeee.......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.eeee...eeeee.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeee..eeeeee....hhhhhhhhhhhh...eee.................ee..eeeeee..eeeeeehhhhhhhhhheeeeeee............hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...........hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3nai C    7 RPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFGT  492
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: DNA/RNA polymerases (850)

Superfamily: DNA/RNA polymerases (850)

Family: RNA-dependent RNA-polymerase (253)

Protein domain: automated matches (100)

Murine norovirus 1 [TaxId: 223997] (6)

1a	d3naia_	A:
1b	d3naib_	B:
1c	d3naic_	C:

(no "CATH Domain" information available for 3NAI)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: RdRP (210)

Family: RdRP_1 (44)

Murine norovirus 1 (2)

1a	RdRP_1-3naiC01	C:24-490
1b	RdRP_1-3naiC02	C:24-490
1c	RdRP_1-3naiC03	C:24-490

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (Q80J95_9CALI | Q80J95)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003724	RNA helicase activity	Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a RNA helix.
	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
	GO:0004197	cysteine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
	GO:0008234	cysteine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0017111	nucleoside-triphosphatase activity	Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0044419	interspecies interaction between organisms	Any process in which an organism has an effect on an organism of a different species.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
	GO:0001172	transcription, RNA-templated	The cellular synthesis of RNA on a template of RNA.
	GO:0039694	viral RNA genome replication	The replication of a viral RNA genome.

Asymmetric Unit
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		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]
		DC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Arg C:7 - Pro C:8	[ RasMol ]
		Gly A:380 - Pro A:381	[ RasMol ]
		Gly A:491 - Thr A:492	[ RasMol ]
		Gly B:380 - Pro B:381	[ RasMol ]
		Ser A:9 - Gly A:10	[ RasMol ]
		Tyr A:124 - Pro A:125	[ RasMol ]
		Tyr B:124 - Pro B:125	[ RasMol ]
		Tyr C:124 - Pro C:125	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

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	3nai
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	Q80J95_9CALI \| Q80J95
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1sh0	HUMAN NOROVIRUS RNA DEPENDENT RNA POLYMERASE
2b43	HUMAN NOROVIRUS RNA DEPENDENT RNA POLYMERASE
3bsn	HUMAN NOROVIRUS RNA DEPENDENT RNA POLYMERASE IN COMPLEX WITH NCT
3bso	HUMAN NOROVIRUS RNA DEPENDENT RNA POLYMERASE IN COMPLEX WITH CTP
3h5x	HUMAN NOROVIRUS RNA DEPENDENT RNA POLYMERASE IN COMPLEX WITH ACT
3h5y	HUMAN NOROVIRUS RNA DEPENDENT RNA POLYMERASE IN COMPLEX WITH CTP
3nah

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 28)

Sites (28, 28)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (0, 0)

Pfam Domains (1, 3)

Gene Ontology (18, 18)

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Still Images

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Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File