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3NAI
Biol. Unit 2
Info
Asym.Unit (249 KB)
Biol.Unit 1 (165 KB)
Biol.Unit 2 (162 KB)
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(1)
Title
:
CRYSTAL STRUCTURES AND FUNCTIONAL ANALYSIS OF MURINE NOROVIRUS RNA-DEPENDENT RNA POLYMERASE
Authors
:
K. H. Kim, J. H. Lee, I. Alam, Y. Park, S. Kang
Date
:
02 Jun 10 (Deposition) - 08 Jun 11 (Release) - 08 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.56
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Rna-Dependent Rna Polymerase, Murine Norovirus, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. H. Kim, J. H. Lee, I. Alam, Y. Park, S. Kang
Crystal Structures And Functional Analysis Of Murine Norovirus Rna-Dependent Rna Polymerase
To Be Published
[
close entry info
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: MANGANESE (III) ION (MN3a)
3b: MANGANESE (III) ION (MN3b)
3c: MANGANESE (III) ION (MN3c)
3d: MANGANESE (III) ION (MN3d)
3e: MANGANESE (III) ION (MN3e)
3f: MANGANESE (III) ION (MN3f)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
5a: 5-FLUOROURACIL (URFa)
5b: 5-FLUOROURACIL (URFb)
5c: 5-FLUOROURACIL (URFc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MN3
4
Ligand/Ion
MANGANESE (III) ION
4
SO4
8
Ligand/Ion
SULFATE ION
5
URF
2
Ligand/Ion
5-FLUOROURACIL
[
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Sites
(17, 17)
Info
All Sites
01: BC3 (SOFTWARE)
02: BC4 (SOFTWARE)
03: BC5 (SOFTWARE)
04: BC6 (SOFTWARE)
05: BC7 (SOFTWARE)
06: BC8 (SOFTWARE)
07: BC9 (SOFTWARE)
08: CC1 (SOFTWARE)
09: CC2 (SOFTWARE)
10: CC3 (SOFTWARE)
11: CC4 (SOFTWARE)
12: CC5 (SOFTWARE)
13: CC6 (SOFTWARE)
14: CC7 (SOFTWARE)
15: CC8 (SOFTWARE)
16: CC9 (SOFTWARE)
17: DC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
BC3
SOFTWARE
ASP B:245 , TYR B:246 , ASP B:346 , URF B:521 , HOH B:581
BINDING SITE FOR RESIDUE MG B 2
02
BC4
SOFTWARE
MG B:2 , ARG B:185 , ASP B:245 , ASP B:346 , ASP B:347 , HOH B:576 , HOH B:635
BINDING SITE FOR RESIDUE URF B 521
03
BC5
SOFTWARE
LYS B:210 , CYS B:213 , GLY B:221 , MN3 B:523 , HOH B:551
BINDING SITE FOR RESIDUE MN3 B 522
04
BC6
SOFTWARE
CYS B:213 , ILE B:214 , MN3 B:522 , HOH B:554 , HOH B:634
BINDING SITE FOR RESIDUE MN3 B 523
05
BC7
SOFTWARE
THR B:28 , GLY B:51 , SER B:52 , SER B:61 , LEU B:62 , HOH B:577
BINDING SITE FOR RESIDUE SO4 B 524
06
BC8
SOFTWARE
ASP B:117 , THR B:120 , LYS B:130 , MET B:195
BINDING SITE FOR RESIDUE SO4 B 525
07
BC9
SOFTWARE
HIS B:149 , ASN B:152
BINDING SITE FOR RESIDUE SO4 B 526
08
CC1
SOFTWARE
TYR B:20 , ASP B:292 , TYR B:293 , TYR C:20 , ASP C:292
BINDING SITE FOR RESIDUE SO4 B 527
09
CC2
SOFTWARE
THR A:328 , GLU A:355 , THR B:328 , VAL B:330 , GLU B:355
BINDING SITE FOR RESIDUE SO4 B 528
10
CC3
SOFTWARE
ASP C:245 , TYR C:246 , ASP C:346 , URF C:521 , HOH C:563 , HOH C:632
BINDING SITE FOR RESIDUE MG C 3
11
CC4
SOFTWARE
MG C:3 , ARG C:185 , ASP C:245 , ASP C:346 , ASP C:347 , ARG C:395 , HOH C:632 , HOH C:636 , HOH C:638
BINDING SITE FOR RESIDUE URF C 521
12
CC5
SOFTWARE
LYS C:210 , CYS C:213 , MN3 C:523
BINDING SITE FOR RESIDUE MN3 C 522
13
CC6
SOFTWARE
GLU C:211 , CYS C:213 , ILE C:214 , MN3 C:522
BINDING SITE FOR RESIDUE MN3 C 523
14
CC7
SOFTWARE
GLY C:51 , SER C:52 , SER C:61 , LEU C:62
BINDING SITE FOR RESIDUE SO4 C 524
15
CC8
SOFTWARE
HIS C:149 , ASN C:152
BINDING SITE FOR RESIDUE SO4 C 525
16
CC9
SOFTWARE
GLY C:400 , ASP C:401 , TRP C:405 , HOH C:602
BINDING SITE FOR RESIDUE SO4 C 526
17
DC1
SOFTWARE
THR C:11 , ALA C:13
BINDING SITE FOR RESIDUE GOL C 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3naia_ (A:)
1b: SCOP_d3naib_ (B:)
1c: SCOP_d3naic_ (C:)
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Protein Domains
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Organisms
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Murine norovirus 1 [TaxId: 223997]
(6)
1a
d3naia_
A:
1b
d3naib_
B:
1c
d3naic_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_RdRP_1_3naiC01 (C:24-490)
1b: PFAM_RdRP_1_3naiC02 (C:24-490)
1c: PFAM_RdRP_1_3naiC03 (C:24-490)
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Organisms
(
)
(
)
Clan
:
RdRP
(210)
Family
:
RdRP_1
(44)
Murine norovirus 1
(2)
1a
RdRP_1-3naiC01
C:24-490
1b
RdRP_1-3naiC02
C:24-490
1c
RdRP_1-3naiC03
C:24-490
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Show PDB file:
Asym.Unit (249 KB)
Header - Asym.Unit
Biol.Unit 1 (165 KB)
Header - Biol.Unit 1
Biol.Unit 2 (162 KB)
Header - Biol.Unit 2
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