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3NAI
Asym. Unit
Info
Asym.Unit (249 KB)
Biol.Unit 1 (165 KB)
Biol.Unit 2 (162 KB)
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(1)
Title
:
CRYSTAL STRUCTURES AND FUNCTIONAL ANALYSIS OF MURINE NOROVIRUS RNA-DEPENDENT RNA POLYMERASE
Authors
:
K. H. Kim, J. H. Lee, I. Alam, Y. Park, S. Kang
Date
:
02 Jun 10 (Deposition) - 08 Jun 11 (Release) - 08 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.56
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Rna-Dependent Rna Polymerase, Murine Norovirus, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. H. Kim, J. H. Lee, I. Alam, Y. Park, S. Kang
Crystal Structures And Functional Analysis Of Murine Norovirus Rna-Dependent Rna Polymerase
To Be Published
[
close entry info
]
Hetero Components
(5, 28)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: MANGANESE (III) ION (MN3a)
3b: MANGANESE (III) ION (MN3b)
3c: MANGANESE (III) ION (MN3c)
3d: MANGANESE (III) ION (MN3d)
3e: MANGANESE (III) ION (MN3e)
3f: MANGANESE (III) ION (MN3f)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
5a: 5-FLUOROURACIL (URFa)
5b: 5-FLUOROURACIL (URFb)
5c: 5-FLUOROURACIL (URFc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
MN3
6
Ligand/Ion
MANGANESE (III) ION
4
SO4
14
Ligand/Ion
SULFATE ION
5
URF
3
Ligand/Ion
5-FLUOROURACIL
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:245 , TYR A:246 , ASP A:346 , URF A:521 , HOH A:529 , HOH A:559 , HOH A:657
BINDING SITE FOR RESIDUE MG A 1
02
AC2
SOFTWARE
MG A:1 , ARG A:185 , ASP A:245 , ASP A:346 , ASP A:347 , ARG A:395 , HOH A:529 , HOH A:559
BINDING SITE FOR RESIDUE URF A 521
03
AC3
SOFTWARE
LYS A:210 , CYS A:213 , GLY A:221 , MN3 A:523
BINDING SITE FOR RESIDUE MN3 A 522
04
AC4
SOFTWARE
GLU A:211 , CYS A:213 , ILE A:214 , MN3 A:522 , HOH A:539 , HOH A:656
BINDING SITE FOR RESIDUE MN3 A 523
05
AC5
SOFTWARE
GLY A:51 , SER A:52 , SER A:61 , LEU A:62
BINDING SITE FOR RESIDUE SO4 A 524
06
AC6
SOFTWARE
PRO A:82 , GLN A:83
BINDING SITE FOR RESIDUE SO4 A 2
07
AC7
SOFTWARE
THR A:120 , LYS A:130 , MET A:195 , GLY A:304
BINDING SITE FOR RESIDUE SO4 A 3
08
AC8
SOFTWARE
TRP A:134 , GLY A:136
BINDING SITE FOR RESIDUE SO4 A 525
09
AC9
SOFTWARE
ASN A:237 , GLY A:400 , ASP A:401 , TRP A:405
BINDING SITE FOR RESIDUE SO4 A 526
10
BC1
SOFTWARE
ARG A:385 , GLN A:386
BINDING SITE FOR RESIDUE SO4 A 527
11
BC2
SOFTWARE
ARG A:7 , PRO A:8 , SER A:9
BINDING SITE FOR RESIDUE GOL A 528
12
BC3
SOFTWARE
ASP B:245 , TYR B:246 , ASP B:346 , URF B:521 , HOH B:581
BINDING SITE FOR RESIDUE MG B 2
13
BC4
SOFTWARE
MG B:2 , ARG B:185 , ASP B:245 , ASP B:346 , ASP B:347 , HOH B:576 , HOH B:635
BINDING SITE FOR RESIDUE URF B 521
14
BC5
SOFTWARE
LYS B:210 , CYS B:213 , GLY B:221 , MN3 B:523 , HOH B:551
BINDING SITE FOR RESIDUE MN3 B 522
15
BC6
SOFTWARE
CYS B:213 , ILE B:214 , MN3 B:522 , HOH B:554 , HOH B:634
BINDING SITE FOR RESIDUE MN3 B 523
16
BC7
SOFTWARE
THR B:28 , GLY B:51 , SER B:52 , SER B:61 , LEU B:62 , HOH B:577
BINDING SITE FOR RESIDUE SO4 B 524
17
BC8
SOFTWARE
ASP B:117 , THR B:120 , LYS B:130 , MET B:195
BINDING SITE FOR RESIDUE SO4 B 525
18
BC9
SOFTWARE
HIS B:149 , ASN B:152
BINDING SITE FOR RESIDUE SO4 B 526
19
CC1
SOFTWARE
TYR B:20 , ASP B:292 , TYR B:293 , TYR C:20 , ASP C:292
BINDING SITE FOR RESIDUE SO4 B 527
20
CC2
SOFTWARE
THR A:328 , GLU A:355 , THR B:328 , VAL B:330 , GLU B:355
BINDING SITE FOR RESIDUE SO4 B 528
21
CC3
SOFTWARE
ASP C:245 , TYR C:246 , ASP C:346 , URF C:521 , HOH C:563 , HOH C:632
BINDING SITE FOR RESIDUE MG C 3
22
CC4
SOFTWARE
MG C:3 , ARG C:185 , ASP C:245 , ASP C:346 , ASP C:347 , ARG C:395 , HOH C:632 , HOH C:636 , HOH C:638
BINDING SITE FOR RESIDUE URF C 521
23
CC5
SOFTWARE
LYS C:210 , CYS C:213 , MN3 C:523
BINDING SITE FOR RESIDUE MN3 C 522
24
CC6
SOFTWARE
GLU C:211 , CYS C:213 , ILE C:214 , MN3 C:522
BINDING SITE FOR RESIDUE MN3 C 523
25
CC7
SOFTWARE
GLY C:51 , SER C:52 , SER C:61 , LEU C:62
BINDING SITE FOR RESIDUE SO4 C 524
26
CC8
SOFTWARE
HIS C:149 , ASN C:152
BINDING SITE FOR RESIDUE SO4 C 525
27
CC9
SOFTWARE
GLY C:400 , ASP C:401 , TRP C:405 , HOH C:602
BINDING SITE FOR RESIDUE SO4 C 526
28
DC1
SOFTWARE
THR C:11 , ALA C:13
BINDING SITE FOR RESIDUE GOL C 2
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3naia_ (A:)
1b: SCOP_d3naib_ (B:)
1c: SCOP_d3naic_ (C:)
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Classes
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Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Murine norovirus 1 [TaxId: 223997]
(6)
1a
d3naia_
A:
1b
d3naib_
B:
1c
d3naic_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_RdRP_1_3naiC01 (C:24-490)
1b: PFAM_RdRP_1_3naiC02 (C:24-490)
1c: PFAM_RdRP_1_3naiC03 (C:24-490)
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Clans
(
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
RdRP
(210)
Family
:
RdRP_1
(44)
Murine norovirus 1
(2)
1a
RdRP_1-3naiC01
C:24-490
1b
RdRP_1-3naiC02
C:24-490
1c
RdRP_1-3naiC03
C:24-490
[
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]
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (249 KB)
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