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(-) Description

Title :  CRYSTAL STRUCTURE OF MURINE NOROVIRUS RNA DEPENDENT RNA POLYMERASE IN COMPLEX WITH RIBAVIRIN
 
Authors :  K. H. Kim, I. Alam
Date :  14 Jun 11  (Deposition) - 09 May 12  (Release) - 09 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Right Handed Fold, Viral Replication Enzyme, Rna Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Alam, J. H. Lee, K. J. Cho, K. R. Han, J. M. Yang, M. S. Chung, K. H. Kim
Crystal Structures Of Murine Norovirus-1 Rna-Dependent Rna Polymerase In Complex With 2-Thiouridine Or Ribavirin.
Virology V. 426 143 2012
PubMed-ID: 22341781  |  Reference-DOI: 10.1016/J.VIROL.2012.01.016

(-) Compounds

Molecule 1 - RNA POLYMERASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: ER2566
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RDRP
    Organism Scientific: MURINE NOROVIRUS 1
    Organism Taxid: 223997

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): A  
Biological Unit 2 (1x):  BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 59)

Asymmetric Unit (4, 59)
No.NameCountTypeFull Name
1GOL26Ligand/IonGLYCEROL
2MG3Ligand/IonMAGNESIUM ION
3RBV3Ligand/Ion1-(BETA-D-RIBOFURANOSYL)-1H-1,2,4-TRIAZOLE-3-CARBOXAMIDE
4SO427Ligand/IonSULFATE ION
Biological Unit 1 (3, 38)
No.NameCountTypeFull Name
1GOL20Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
3RBV2Ligand/Ion1-(BETA-D-RIBOFURANOSYL)-1H-1,2,4-TRIAZOLE-3-CARBOXAMIDE
4SO416Ligand/IonSULFATE ION
Biological Unit 2 (3, 37)
No.NameCountTypeFull Name
1GOL16Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
3RBV2Ligand/Ion1-(BETA-D-RIBOFURANOSYL)-1H-1,2,4-TRIAZOLE-3-CARBOXAMIDE
4SO419Ligand/IonSULFATE ION

(-) Sites  (58, 58)

Asymmetric Unit (58, 58)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:250 , THR A:308 , THR A:309 , ASN A:312 , TYR A:344 , GLY A:345 , ASP A:346 , ASP A:347 , HOH A:844 , HOH A:866BINDING SITE FOR RESIDUE RBV A 601
02AC2SOFTWARETRP A:134 , HOH A:766BINDING SITE FOR RESIDUE SO4 A 602
03AC3SOFTWARETHR A:148 , HIS A:149 , ASN A:152BINDING SITE FOR RESIDUE SO4 A 603
04AC4SOFTWAREHIS A:241 , THR A:387 , LEU A:388 , TRP A:405 , HOH A:763 , HOH A:857BINDING SITE FOR RESIDUE SO4 A 604
05AC5SOFTWARELYS A:29 , HIS A:426 , GLN A:427 , GLU A:431BINDING SITE FOR RESIDUE SO4 A 605
06AC6SOFTWARETYR A:246 , THR A:247 , ARG A:248 , HOH A:822BINDING SITE FOR RESIDUE SO4 A 606
07AC7SOFTWAREARG A:7 , PRO A:8 , SER A:9 , SER A:61 , ARG A:67BINDING SITE FOR RESIDUE SO4 A 607
08AC8SOFTWARELYS A:158 , SER A:159 , HOH A:843BINDING SITE FOR RESIDUE SO4 A 608
09AC9SOFTWAREARG A:408 , GOL A:615BINDING SITE FOR RESIDUE SO4 A 609
10BC1SOFTWAREASP A:243 , ASP A:347 , GLU A:348 , SER A:392 , HOH A:802BINDING SITE FOR RESIDUE MG A 610
11BC2SOFTWARESER A:27 , THR A:28 , LYS A:29 , ASN A:425BINDING SITE FOR RESIDUE GOL A 611
12BC3SOFTWAREGLY A:400 , ASP A:401 , TRP A:405BINDING SITE FOR RESIDUE GOL A 612
13BC4SOFTWARESER A:223 , MET A:224 , ASN A:225BINDING SITE FOR RESIDUE GOL A 614
14BC5SOFTWAREASP A:410 , ARG A:411 , HIS A:453 , SO4 A:609BINDING SITE FOR RESIDUE GOL A 615
15BC6SOFTWARETHR A:328 , LEU A:354 , GLU A:355 , THR B:328 , GLU B:355 , GOL B:613 , GOL B:618BINDING SITE FOR RESIDUE GOL A 616
16BC7SOFTWAREARG A:96 , PHE A:215 , ASN A:216 , PRO A:217 , ARG A:219 , MET A:336 , GLU A:340 , PHE A:341BINDING SITE FOR RESIDUE GOL A 617
17BC8SOFTWAREPRO A:103 , GLN A:104 , LEU A:268 , PRO A:270BINDING SITE FOR RESIDUE GOL A 618
18BC9SOFTWARESER A:115 , ASP A:207 , PRO A:306BINDING SITE FOR RESIDUE GOL A 619
19CC1SOFTWAREPRO A:6 , ALA A:18 , TYR A:293BINDING SITE FOR RESIDUE GOL A 620
20CC2SOFTWAREASP B:250 , THR B:309 , ASN B:312 , GLY B:345 , ASP B:346 , ASP B:347 , HOH B:747 , HOH B:776BINDING SITE FOR RESIDUE RBV B 601
21CC3SOFTWAREHIS B:149 , ASN B:152BINDING SITE FOR RESIDUE SO4 B 602
22CC4SOFTWARETYR B:246 , ARG B:248BINDING SITE FOR RESIDUE SO4 B 603
23CC5SOFTWARELYS A:158 , LYS B:29 , HIS B:426 , GLN B:427 , HOH B:714BINDING SITE FOR RESIDUE SO4 B 604
24CC6SOFTWARELYS B:158 , SER B:159 , HOH B:765BINDING SITE FOR RESIDUE SO4 B 605
25CC7SOFTWAREASP B:410 , ARG B:411 , HIS B:453BINDING SITE FOR RESIDUE SO4 B 606
26CC8SOFTWAREGLY B:51 , SER B:52 , SER B:61 , LEU B:62 , GLN B:63BINDING SITE FOR RESIDUE SO4 B 607
27CC9SOFTWAREARG B:408BINDING SITE FOR RESIDUE SO4 B 608
28DC1SOFTWAREASP B:243 , ASP B:347 , GLU B:348 , SER B:392BINDING SITE FOR RESIDUE MG B 609
29DC2SOFTWARESER B:223 , MET B:224 , ASN B:225BINDING SITE FOR RESIDUE GOL B 610
30DC3SOFTWAREVAL B:325 , ARG B:329 , ASP B:331BINDING SITE FOR RESIDUE GOL B 611
31DC4SOFTWARESER B:27 , THR B:28 , LYS B:29 , ASN B:425BINDING SITE FOR RESIDUE GOL B 612
32DC5SOFTWAREGLU A:338 , ASN A:353 , GOL A:616 , VAL B:327 , ARG B:329 , LYS B:360 , HOH B:764BINDING SITE FOR RESIDUE GOL B 613
33DC6SOFTWAREPRO B:82 , GLN B:83 , HOH B:750BINDING SITE FOR RESIDUE GOL B 614
34DC7SOFTWAREARG B:248BINDING SITE FOR RESIDUE GOL B 615
35DC8SOFTWAREASP B:401 , TRP B:405 , ASN C:237BINDING SITE FOR RESIDUE GOL B 616
36DC9SOFTWAREGLN B:104 , LEU B:268 , SER B:269 , PRO B:270BINDING SITE FOR RESIDUE GOL B 617
37EC1SOFTWAREVAL A:327 , LYS A:360 , GOL A:616 , GLU B:338 , ASN B:353 , LEU B:354 , GLU B:355BINDING SITE FOR RESIDUE GOL B 618
38EC2SOFTWARELYS C:169 , LEU C:186 , LEU C:187 , ASP C:250 , LEU C:301 , SER C:303 , THR C:308 , THR C:309 , ASN C:312 , TYR C:344 , GLY C:345 , ASP C:346BINDING SITE FOR RESIDUE RBV C 601
39EC3SOFTWAREHIS C:149 , ASN C:152BINDING SITE FOR RESIDUE SO4 C 602
40EC4SOFTWARETHR C:247 , ARG C:248 , HOH C:723BINDING SITE FOR RESIDUE SO4 C 603
41EC5SOFTWAREASP C:243 , ASP C:347 , GLU C:348 , SER C:392 , HOH C:767BINDING SITE FOR RESIDUE MG C 604
42EC6SOFTWAREARG C:408 , HOH C:770BINDING SITE FOR RESIDUE SO4 C 605
43EC7SOFTWAREGLN C:389 , GLY C:400 , ASP C:401 , GOL C:616BINDING SITE FOR RESIDUE GOL C 606
44EC8SOFTWAREALA B:236 , ALA C:236 , ASN C:237BINDING SITE FOR RESIDUE SO4 C 607
45EC9SOFTWARELYS C:158 , SER C:159 , HOH C:766 , HOH C:805BINDING SITE FOR RESIDUE SO4 C 608
46FC1SOFTWAREGLY C:51 , SER C:52 , SER C:61 , LEU C:62 , GLN C:63BINDING SITE FOR RESIDUE SO4 C 609
47FC2SOFTWARETRP C:134 , GLY C:136BINDING SITE FOR RESIDUE SO4 C 610
48FC3SOFTWAREARG C:248BINDING SITE FOR RESIDUE SO4 C 611
49FC4SOFTWAREVAL C:359 , ARG C:366 , GLY C:380 , PRO C:381BINDING SITE FOR RESIDUE SO4 C 612
50FC5SOFTWAREARG C:374 , ALA C:375 , LEU C:382 , GLU C:383 , HOH C:774 , HOH C:818BINDING SITE FOR RESIDUE SO4 C 613
51FC6SOFTWARETYR C:240 , ARG C:384 , GLN C:386BINDING SITE FOR RESIDUE SO4 C 614
52FC7SOFTWAREASP C:410 , ARG C:411 , HIS C:453BINDING SITE FOR RESIDUE SO4 C 615
53FC8SOFTWAREASN B:237 , ALA C:236 , PHE C:238 , HIS C:241 , THR C:387 , LEU C:388 , GLN C:389 , TRP C:405 , GOL C:606BINDING SITE FOR RESIDUE GOL C 616
54FC9SOFTWAREGLN B:64 , ARG B:67 , THR C:11BINDING SITE FOR RESIDUE GOL C 617
55GC1SOFTWARESER C:223 , MET C:224 , ASN C:225BINDING SITE FOR RESIDUE GOL C 618
56GC2SOFTWARESER C:27 , THR C:28 , LYS C:29 , ASN C:425BINDING SITE FOR RESIDUE GOL C 619
57GC3SOFTWAREGLN C:146 , HIS C:149 , ALA C:150 , ASP C:191 , GLY C:193 , HOH C:758 , HOH C:855BINDING SITE FOR RESIDUE GOL C 620
58GC4SOFTWAREARG C:96 , PRO C:217 , MET C:336 , SER C:339 , GLU C:340 , PHE C:341BINDING SITE FOR RESIDUE GOL C 621

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:206 -A:307
2B:206 -B:307
3C:206 -C:307

(-) Cis Peptide Bonds  (15, 15)

Asymmetric Unit
No.Residues
1Tyr A:124 -Pro A:125
2Gly A:380 -Pro A:381
3Ser A:463 -Arg A:464
4Val A:465 -Ser A:466
5Ser A:466 -Lys A:467
6Met A:476 -Val A:477
7Ser B:9 -Gly B:10
8Tyr B:124 -Pro B:125
9Gly B:380 -Pro B:381
10Gly B:435 -His B:436
11His B:436 -Ala B:437
12Ser C:9 -Gly C:10
13Tyr C:124 -Pro C:125
14Gly C:380 -Pro C:381
15Gly C:491 -Thr C:492

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SFU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SFU)

(-) Exons   (0, 0)

(no "Exon" information available for 3SFU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:480
 aligned with Q80J95_9CALI | Q80J95 from UniProtKB/TrEMBL  Length:1687

    Alignment length:487
                                  1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501      1511      1521      1531      1541      1551      1561      1571      1581      1591      1601      1611      1621      1631      1641      1651      1661       
        Q80J95_9CALI   1182 LPRPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFG 1668
               SCOP domains d3sfua_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee..eeeeee.........eeeee...........ee.............hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh........hhhhhhhhh............hhhhhh.....hhhhhhhhhhhhhhhhhh.....eeeeee...ee.hhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.eeee...eeeee.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..eeeeee..eeeeee....hhhhhhhhhhhh.......................ee..eeeeee..eeeee.hhhhhhhhhheeeeeee............hhhhhhhhhhhhhh.hhhhhhhhh.....-------.....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3sfu A    5 LPRPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSK-------EMVVPRHRSVLRWVRFG  491
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464  |      -|      484       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        467     475                


Chain B from PDB  Type:PROTEIN  Length:487
 aligned with Q80J95_9CALI | Q80J95 from UniProtKB/TrEMBL  Length:1687

    Alignment length:487
                                  1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501      1511      1521      1531      1541      1551      1561      1571      1581      1591      1601      1611      1621      1631      1641      1651      1661       
        Q80J95_9CALI   1182 LPRPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFG 1668
               SCOP domains d3sfub_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee..eeeeee.........eeeee...........ee.............hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh......hhhhhhhhh............hhhhhh.....hhhhhhhhhhhhhhhhhh.....eeeeee...ee.hhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.eeee...eeeee.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeee..eeeeee....hhhhhhhhhhhh.......................ee..eeeeee..eeeee.hhhhhhhhhheeeeeee............hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3sfu B    5 LPRPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFG  491
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       


Chain C from PDB  Type:PROTEIN  Length:478
 aligned with Q80J95_9CALI | Q80J95 from UniProtKB/TrEMBL  Length:1687

    Alignment length:488
                                  1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501      1511      1521      1531      1541      1551      1561      1571      1581      1591      1601      1611      1621      1631      1641      1651      1661        
        Q80J95_9CALI   1182 LPRPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVSKEAAQSGIEMVVPRHRSVLRWVRFGT 1669
               SCOP domains d3sfuc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee..eeeeee.........eeeee...........ee.............hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh......hhhhhhhhh............hhhhhh.....hhhhhhhhhhhhhhhhhh.....eeeeee...ee.hhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.eeee...eeeee.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeee..eeeeee....hhhhhhhhhhhh.......................ee..eeeeee..eeeee.hhhhhhhhhheeeeeee..............hhhhhhhhhhhh..............----------...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3sfu C    5 LPRPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEKLPPGAWEPAYLGSKDERVDGPSLQQVMRDQLKPYSEPRGLLPPQEILDAVCDAIENRLENTLEPQKPWTFKKACESLDKNTSSGYPYHKQKSKDWTGSAFIGDLGDQATHANNMYEMGKSMRPIYTAALKDELVKPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKETCIFNPIRVGMSMNEDGPFIFARHANFRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDVGDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLELDMVKYTMALRRYGLLPTRADKEEGPLERRQTLQGISFLRRAIVGDQFGWYGRLDRASIDRQLLWTKGPNHQNPFETLPGHAQRPSQLMALLGEAAMHGEKYYRTVASRVS----------VVPRHRSVLRWVRFGT  492
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464 |       -  |    484        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       466        477
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SFU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SFU)

(-) Gene Ontology  (18, 18)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q80J95_9CALI | Q80J95)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003724    RNA helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a RNA helix.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
    GO:0004197    cysteine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0008234    cysteine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0017111    nucleoside-triphosphatase activity    Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0044419    interspecies interaction between organisms    Any process in which an organism has an effect on an organism of a different species.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
    GO:0039694    viral RNA genome replication    The replication of a viral RNA genome.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q80J95_9CALI | Q80J95: 2m4g 2mcd 2mch 3nah 3nai 3qid 3sfg 3upf 3uqs 3ur0 4ash 4nru 4o4r 4x2v 4x2w 4x2x 4x2y

(-) Related Entries Specified in the PDB File

3nah CRYSTAL STRUCTURE OF MURINE NOROVIRUS RNA DEPENDENT RNA POLYMERASE IN COMPLEX WITH 5FU.
3nai CRYSTAL STRUCTURE OF MURINE NOROVIRUS RNA DEPENDENT RNA POLYMERASE.
3qid CRYSTAL STRUCTURE OF MURINE NOROVIRUS RNA DEPENDENT RNA POLYMERASE.
3sfg